View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_17 (Length: 487)
Name: NF1739_high_17
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 25867472 - 25867364
Alignment:
| Q |
142 |
ttccacggtgttgaaatataagctaaaatatagatggttattaaatggtcatatagatggctgtgtaggagccaatattttcaaattgaggggtgccaaa |
241 |
Q |
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| T |
25867472 |
ttccacggtgttgaaatataaggtaaaatatagatggttattaaatggtcatatagatggctgtgtaggagccaatattttcaaattgaggggtgccaaa |
25867373 |
T |
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| Q |
242 |
ccttagatt |
250 |
Q |
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||||||||| |
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| T |
25867372 |
ccttagatt |
25867364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 295 - 469
Target Start/End: Complemental strand, 25866905 - 25866717
Alignment:
| Q |
295 |
cctgcaaaatatccccagtttactacaagttgtttgtaattgttgtagttttattttgaaggattattttactcctatat---atat-ttaccattcatg |
390 |
Q |
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| T |
25866905 |
cctgcaaaatatcccaagtttactacaagttgtttgtaattattgtagttttattttgaaggattattttactcctatatgagctatattaccattcatg |
25866806 |
T |
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| Q |
391 |
tcaaagcatgttatgagaaaaacatgattttac-tcgtatt---------tatgatagaatgataaattaaaaattatcacgaatcctt |
469 |
Q |
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| T |
25866805 |
tcaaagcatgttatgagaaaaacgtgattttacttcgtatttaccaataatatgatagaatgataaattagaaatcatcacgaatcctt |
25866717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 25850481 - 25850430
Alignment:
| Q |
321 |
aagttgtttgtaattgttgtagttttattttgaaggattattttactcctat |
372 |
Q |
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| T |
25850481 |
aagttgtttgtaattgttgtagttttattttgaagcattattttactcctat |
25850430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 25868639 - 25868685
Alignment:
| Q |
142 |
ttccacggtgttgaaatataagctaaaatatagatggttattaaatg |
188 |
Q |
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| T |
25868639 |
ttccacggtgttgaaatataagctaaaatatagatggttattaaatg |
25868685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 25867608 - 25867563
Alignment:
| Q |
5 |
tactaaaccgaaaatgggtggaatgcaaaataaacggctcttttctt |
51 |
Q |
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| T |
25867608 |
tactaaaccgaaaatggg-ggaatgcaaaataaacggctcttttctt |
25867563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 25867346 - 25867312
Alignment:
| Q |
271 |
ggtcaaaaaaggtaactacaatgtcctgcaaaata |
305 |
Q |
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| T |
25867346 |
ggtcaaaaaaggtaactacaatgtcctgcaaaata |
25867312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 25868513 - 25868545
Alignment:
| Q |
16 |
aaatgggtggaatgcaaaataaacggctctttt |
48 |
Q |
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| T |
25868513 |
aaatggggggaatgcaaaataaacggctctttt |
25868545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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