View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_18 (Length: 477)
Name: NF1739_high_18
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 37032150 - 37031710
Alignment:
| Q |
18 |
aacctattcatatttaaatacagtgtcttacgtgtggaccaatttagaatgaagttccactcccacatttatagaacacactcagagcctagtcttcgta |
117 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37032150 |
aacctattcataattaattacagtgtcttacgtgtggaccaatttagaatgaagttccactcccacatttatagaacacactcagagcctagtcttcgta |
37032051 |
T |
|
| Q |
118 |
attgaaaagnnnnnnnnnnnnggtgtagtttagcttccactaatacaagtttatatgtacgaattataacttaggtttcataatttcattccttatgtgt |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37032050 |
attgaaaa--------aaaaaggtgtagtttagcttccactaatacaagtttatatgaacgaattataacttaggtttcataatttcattccttatgtgt |
37031959 |
T |
|
| Q |
218 |
ttgtaaactgacggtgatgaaattaattgattctgaattgggccacacgtaggacagtgtctttaaatggaaaggtatatacctcgaaaataatatgcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37031958 |
ttgtaaactgacggtgatgaaattaattgattctgaattgggccacacgtaggacagtgtctttaaatggaaaggtatatacctcgaaaataatatgcgt |
37031859 |
T |
|
| Q |
318 |
gacagatacaacttgaagagttttgggagatatcatagcacaaatttaaagtttgcatatatatgtaggccaatataaaattatctaccatgaaataata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37031858 |
gacagatacaacttgaagagttttgggagatatcatagcacaaatttaaagtttgcatatatatgtaggccaatataaaattatctaccatgaaataata |
37031759 |
T |
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| Q |
418 |
catgtgtatgtggtccaaaacaaaatctttggcctaaagggaaattcat |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37031758 |
catgtgtatgtggtccaaaacaaaatctttggcctaaagggaaattcat |
37031710 |
T |
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