View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_2 (Length: 771)

Name: NF1739_high_2
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_2
NF1739_high_2
[»] chr7 (2 HSPs)
chr7 (360-746)||(24765143-24765527)
chr7 (11-363)||(24766112-24766462)
[»] chr2 (1 HSPs)
chr2 (604-753)||(41750768-41750919)
[»] chr3 (5 HSPs)
chr3 (604-753)||(48761421-48761572)
chr3 (679-753)||(48761166-48761240)
chr3 (369-438)||(47763328-47763398)
chr3 (679-719)||(48760945-48760985)
chr3 (227-288)||(16982293-16982354)
[»] scaffold1598 (2 HSPs)
scaffold1598 (604-753)||(358-509)
scaffold1598 (679-753)||(103-177)
[»] chr6 (1 HSPs)
chr6 (604-753)||(5169137-5169288)
[»] chr5 (2 HSPs)
chr5 (604-753)||(10647463-10647614)
chr5 (222-281)||(21005047-21005107)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 360 - 746
Target Start/End: Complemental strand, 24765527 - 24765143
Alignment:
Q  360 aatggaatcattcattataagaaccagctgtagcaaagaacaatcaaacataaatattaaaccacttttaaattgcaaacaaatcaaagagtgcctaata 459  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24765527 aatggaatcattcattataagaaccagctgtagcaaagaaccatcaaacataaatattaaaccacttttaaattgcaaacaaatcaaagagtgcctaata 24765428  T
Q  460 ttagtggagatatgccggcatatatagccatgagtgttggtgttgtaacatgttcatatgcatggccatgggagcaaaatggtgttcagtataatagttc 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24765427 ttagtggagatatgccggcatatatagccatgagtgttggtgttgtaacatgttcatatgcatggccatgggagcaaaatagtgttcagtataatagttc 24765328  T
Q  560 aagatgaaagtaaaactgatgtgcgttggatgnnnnnnnnnnnngcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttagg 659  Q
    ||||||||||||||||||||||| ||||||||            ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  24765327 aagatgaaagtaaaactgatgtgtgttggatg--tatatatatagcagaaaatcgaggtgctgcattcggtgcatctgagtgggaaaatggagagttagg 24765230  T
Q  660 ctgagttgtgaaatgtgcaatttacatgggttaccaatgaaaaatattaattgcagtgcattgttcaaagagaggagaaattttagc 746  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24765229 ctgagttgtgaaatgtgcaatttacatgggttaccgatggaaaatattaattgcagtgcattgttcaaagagaggataaattttagc 24765143  T

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Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 24766462 - 24766112
Alignment:
Q  11 ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24766462 ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac 24766363  T
Q  111 tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacctaaaactaaaaataacatgcatccaacaaagtcctccatcgtaaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24766362 tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacttaaaactaaaaataacatacatccaacaaagtcctccatcgtaaaaatc 24766263  T
Q  211 ccatgatgccaccaacgcttgctccacaaaatgcccataattcaacaccttcatttaaagttaacaccacgttcagtaggtttgcaaacaaaacagactt 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24766262 ccatgatgccaccaacgcttgctccacaaaatgcccataatgcaacaccttcatttaaagttaacaccacgttcagtaggtttgcaaacaaaac-gactt 24766164  T
Q  311 nnnnnnnnnttaaacaaacaatagcgccaaactgttgatgtcatgtcggaatg 363  Q
             |||||||||||||| ||||||| |||||||||||||||||||||    
T  24766163 -aaaaaaaattaaacaaacaataccgccaaattgttgatgtcatgtcggaatg 24766112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 604 - 753
Target Start/End: Complemental strand, 41750919 - 41750768
Alignment:
Q  604 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttaggctgagttgtg--aaatgtgcaatttacatgggttaccaatgaaa 701  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||    
T  41750919 gcagaaaattgaggtgctgcattcgatgcatctgagtgggaaaatgaagagtcaggctgagttgtgtgaaatgtgcaatttacatgggttaccgatgaaa 41750820  T
Q  702 aatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41750819 aatattaattgcagtgcatcgttcaaagagaggagaaattttagcatagtta 41750768  T

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Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 604 - 753
Target Start/End: Complemental strand, 48761572 - 48761421
Alignment:
Q  604 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttaggctgagttgtg--aaatgtgcaatttacatgggttaccaatgaaa 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||| ||||||    
T  48761572 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatggagagtcaggctgagttgtgtgaaatgtgcaatttacatgggttaccgatgaaa 48761473  T
Q  702 aatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  48761472 aatattaattgcagggcatcgttcaaagagaggagaaattttagcatagtta 48761421  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 679 - 753
Target Start/End: Complemental strand, 48761240 - 48761166
Alignment:
Q  679 atttacatgggttaccaatgaaaaatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48761240 atttgcatgggttaccgatgaaaaatattaattgcagtgcatcgttcaaagagaggagaaattttagcatagtta 48761166  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 47763328 - 47763398
Alignment:
Q  369 attcattataagaaccagctgtagcaaagaaca-atcaaacataaatattaaaccacttttaaattgcaaa 438  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||||||| ||||||||    
T  47763328 attcattataagaaccagttgtagcaaagcacgcatcaaacataaatattaaaccacttttacattgcaaa 47763398  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 679 - 719
Target Start/End: Complemental strand, 48760985 - 48760945
Alignment:
Q  679 atttacatgggttaccaatgaaaaatattaattgcagtgca 719  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  48760985 atttacatgggttaccgatggaaaatattaattgcagtgca 48760945  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 16982354 - 16982293
Alignment:
Q  227 gcttgctccacaaaatgcccataattcaacaccttcatttaaagttaacaccacgttcagta 288  Q
    ||||| ||||||||||| ||| ||| ||||||||||||||||||  |||| ||||| |||||    
T  16982354 gcttgatccacaaaatgtccaaaatgcaacaccttcatttaaagcgaacatcacgtacagta 16982293  T

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Target: scaffold1598 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 604 - 753
Target Start/End: Complemental strand, 509 - 358
Alignment:
Q  604 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttaggctgagttgtg--aaatgtgcaatttacatgggttaccaatgaaa 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||||  |||||    
T  509 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgtagagtcaggctgagttgtgtgaaatgtgcaatttacatgggttaccgttgaaa 410  T
Q  702 aatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  409 aatattaattgcagggcatcgttcaaagagaggagaaattttagcatagtta 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1598; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 679 - 753
Target Start/End: Complemental strand, 177 - 103
Alignment:
Q  679 atttacatgggttaccaatgaaaaatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  177 atttgcatgggttaccgatgaaaaatattaattgcagtgcatcgttcaaagagaggagaaattttagcatagtta 103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 604 - 753
Target Start/End: Complemental strand, 5169288 - 5169137
Alignment:
Q  604 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttaggctgagttgtg--aaatgtgcaatttacatgggttaccaatgaaa 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||||  |||||    
T  5169288 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatggagagtcaggctgagttgtgtgaaatgtgcaatttacatgggttaccggtgaaa 5169189  T
Q  702 aatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  5169188 aatattaattgcagggcatcgttcaaagagaggagaaattttagcatagtta 5169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 604 - 753
Target Start/End: Original strand, 10647463 - 10647614
Alignment:
Q  604 gcagaaaattgaggtgctgcattcggtgcatctgagtgggaaaatgaagagttaggctgagttgtg--aaatgtgcaatttacatgggttaccaatgaaa 701  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||| |||||  ||||||||||||||||||||||||  ||| ||    
T  10647463 gcagaaaattgagttgctgcattcgatgcatctgagtgggaaaatggagagtcaggctgaattgtgtgaaatgtgcaatttacatgggttactgatggaa 10647562  T
Q  702 aatattaattgcagtgcattgttcaaagagaggagaaattttagcatagtta 753  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10647563 aatattaattgcagtgcatcgttcaaagagaggagaaattttagcatagtta 10647614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 21005047 - 21005107
Alignment:
Q  222 ccaacgcttgctccacaaaatgcccataattcaacaccttca-tttaaagttaacaccacg 281  Q
    |||||||||||||||||||||| || |||| ||||||||||| |||||||| |||||||||    
T  21005047 ccaacgcttgctccacaaaatgaccgtaatgcaacaccttcattttaaagtcaacaccacg 21005107  T

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