View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_22 (Length: 419)
Name: NF1739_high_22
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 23272004 - 23271628
Alignment:
| Q |
1 |
actccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23272004 |
actccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcag |
23271905 |
T |
|
| Q |
101 |
aacacaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23271904 |
aacacaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagaga |
23271805 |
T |
|
| Q |
201 |
aggtaaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgct |
300 |
Q |
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| T |
23271804 |
aggtaaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgct |
23271705 |
T |
|
| Q |
301 |
tcagaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatactcctga |
377 |
Q |
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| T |
23271704 |
tcagaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaaatgaagccttatattcctga |
23271628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 3731537 - 3731490
Alignment:
| Q |
372 |
tcctgaggtactttttgttgatcctagctcatgagcagatgatttgga |
419 |
Q |
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| T |
3731537 |
tcctgaggtactttttgttgatcatagctcatgagcagatgatttgga |
3731490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 50087740 - 50087387
Alignment:
| Q |
4 |
ccaaactattaccaaggaaaagaaagagcaatgcttttaccaaactgtttattcagaatgggtggtgctgctattcttttatcaaacaaaaaagcagaac |
103 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||| || | |||| |
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| T |
50087740 |
ccaaactattaccaaggaaatgaaagagccatgcttttaccaaattgtttgttcagaatgggtggtgctgctattatgttatcaaacagaacaacagaga |
50087641 |
T |
|
| Q |
104 |
acaaaagagcaaaatatagattgatgcaagttgttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaagg |
203 |
Q |
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| | |||||||||||| ||||| | || ||||||||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| |||||| |
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| T |
50087640 |
aaagaagagcaaaatacagattagttcatgttgttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaagg |
50087541 |
T |
|
| Q |
204 |
taaagttggaatttcacttcaaaaggatcttatggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttca |
303 |
Q |
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| T |
50087540 |
taaagttggaatatcacttcaaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttca |
50087441 |
T |
|
| Q |
304 |
gaacaattactctttcttttcacactcattggaaagaaaatcttcaaccctaaa |
357 |
Q |
| |
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||||||||||| ||||| ||||||||||||| | ||||| || ||||||||| |
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| T |
50087440 |
gaacaattactttttctcatcacactcattggtagaaaaatatttaaccctaaa |
50087387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 141 - 369
Target Start/End: Complemental strand, 33446809 - 33446580
Alignment:
| Q |
141 |
aactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaagttggaatttcacttcaaaagga-tcttatggc |
239 |
Q |
| |
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||||||||||||| ||| |||||| |||||| ||| ||||| || |||||||||| ||||| |||||||||||||||| ||| | || | ||||||||| |
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| T |
33446809 |
aactcacaaaggatctgatgataaaacttaccattgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggc |
33446710 |
T |
|
| Q |
240 |
tatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaacaattactctttcttttcacactcattggaaag |
339 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||| | ||||||||| || | |||| ||||||| ||||||||||||||||| |||| |||| |
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| T |
33446709 |
aatagtaggagaagcattgaaatcaaatataataactattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattgaaaag |
33446610 |
T |
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| Q |
340 |
aaaatcttcaaccctaaaatgaagccttat |
369 |
Q |
| |
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||||||||||| |||||||||| ||||| |
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| T |
33446609 |
aaaatcttcaattataaaatgaagtcttat |
33446580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 11683851 - 11683805
Alignment:
| Q |
372 |
tcctgaggtactttttgttgatcctagctcatgagcagatgatttgg |
418 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11683851 |
tcctgaggtactttttgttgatcatagctcatgagcagatgatttgg |
11683805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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