View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_23 (Length: 419)
Name: NF1739_high_23
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Complemental strand, 29014887 - 29014490
Alignment:
| Q |
6 |
aggagcagagatagcctgtttgatagtctttggttgctaagattggagtaggatggagcctaggaaaaacacattaacaattacaacgtattacgaccat |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29014887 |
aggatcagacatagcctgtttgatagtctttggttgctaagattggagtaggatggagcctaggaaaaacacattaacaattacaacgtattacgaccat |
29014788 |
T |
|
| Q |
106 |
gtaaaagcacaagataggaaaaaccagacgaagttatagaggaatccaaaatctctccctctgcatcttctacacgccgttttcaannnnnnnaatcaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
29014787 |
ataaaagcacaagataggaaaaaccagacgaagttatagaggaatccaaaatctctccctcagcatcttctacacgccgttttcaatttttttaatcaaa |
29014688 |
T |
|
| Q |
206 |
acatagagaccacaataacataaagtacaactaccagatcaatagtaagaaagttatcgcttatcagaaaaggtaaagcatatgcacacttcttaaacag |
305 |
Q |
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| T |
29014687 |
acatagagaccacaataacataaagtacaactaccagatcaatagtaagaaagttatcgcttatcagaaaaggtaaagcatatgcacacttcttaaacag |
29014588 |
T |
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| Q |
306 |
gagaggactattttgaagtttcgatagccatatttctctaacatatatctatggctttataacttcagatggaatgctttctttataaatgaccaaac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29014587 |
gagaggactattttgaagtttcgatagccatatttctctaacatatatctatggctttataacttcagatggaatgctttctttataaatgaccaaac |
29014490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 9592770 - 9592820
Alignment:
| Q |
213 |
gaccacaataacataaagtacaactaccagatcaatagtaagaaagttatc |
263 |
Q |
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| T |
9592770 |
gaccagaaaaacataaagtacaacaaccagattaatagtaagaaatttatc |
9592820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 9605583 - 9605696
Alignment:
| Q |
225 |
ataaagtacaactaccagatcaatagtaagaaagttatcgcttatcagaaaaggtaaagcatatgcacacttcttaaacaggagaggactattttgaagt |
324 |
Q |
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|||||||| ||||||||||| | |||||||||||| ||| ||||||| ||||| ||| |||| |||||||| |||| | ||||||||||| | |
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| T |
9605583 |
ataaagtataactaccagataactagtaagaaagtaatc-------agaaaagataaagtgtatacacatttcttaaagaggacaaaactattttgaatt |
9605675 |
T |
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| Q |
325 |
ttcgatagccatatttctcta |
345 |
Q |
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||| |||||||||||||||| |
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| T |
9605676 |
ttcactagccatatttctcta |
9605696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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