View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_33 (Length: 375)

Name: NF1739_high_33
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_33
NF1739_high_33
[»] chr3 (33 HSPs)
chr3 (14-361)||(24107033-24107380)
chr3 (14-244)||(27864798-27865028)
chr3 (14-243)||(38758715-38758943)
chr3 (21-244)||(3171603-3171823)
chr3 (14-240)||(54446127-54446349)
chr3 (22-245)||(19860605-19860826)
chr3 (22-244)||(14812426-14812648)
chr3 (244-361)||(24616626-24616742)
chr3 (22-198)||(18025894-18026072)
chr3 (163-244)||(3171488-3171569)
chr3 (121-244)||(27865012-27865135)
chr3 (167-245)||(31596747-31596825)
chr3 (131-245)||(46684096-46684210)
chr3 (132-245)||(16907928-16908041)
chr3 (163-245)||(24107407-24107489)
chr3 (90-223)||(21792303-21792433)
chr3 (278-361)||(24114064-24114147)
chr3 (182-243)||(18025880-18025941)
chr3 (163-244)||(19860490-19860571)
chr3 (167-244)||(38758607-38758684)
chr3 (179-244)||(46685537-46685602)
chr3 (194-243)||(11422379-11422428)
chr3 (163-232)||(21792228-21792297)
chr3 (163-241)||(54446022-54446100)
chr3 (167-219)||(18026111-18026163)
chr3 (190-244)||(30385180-30385234)
chr3 (190-244)||(42592399-42592453)
chr3 (190-241)||(18024567-18024618)
chr3 (190-244)||(18024922-18024976)
chr3 (190-244)||(25629430-25629484)
chr3 (192-245)||(10817809-10817862)
chr3 (190-242)||(7583955-7584007)
chr3 (190-246)||(40941838-40941894)
[»] chr6 (15 HSPs)
chr6 (22-245)||(5367530-5367752)
chr6 (12-246)||(3659057-3659290)
chr6 (22-216)||(28944360-28944558)
chr6 (130-244)||(8286787-8286901)
chr6 (121-244)||(8287379-8287502)
chr6 (166-244)||(3658951-3659029)
chr6 (164-245)||(28944243-28944324)
chr6 (179-241)||(3720052-3720115)
chr6 (131-243)||(5367407-5367528)
chr6 (190-243)||(9899560-9899613)
chr6 (211-243)||(13119207-13119239)
chr6 (190-245)||(19048242-19048297)
chr6 (190-245)||(30859918-30859973)
chr6 (190-244)||(29836155-29836209)
chr6 (180-229)||(8286566-8286615)
[»] chr7 (13 HSPs)
chr7 (14-244)||(4265083-4265313)
chr7 (14-243)||(8905640-8905868)
chr7 (131-244)||(18471730-18471843)
chr7 (129-244)||(18470138-18470253)
chr7 (121-242)||(4264977-4265099)
chr7 (164-245)||(25749310-25749390)
chr7 (129-241)||(8328197-8328309)
chr7 (173-244)||(25749396-25749467)
chr7 (172-242)||(8329046-8329115)
chr7 (166-241)||(8905898-8905973)
chr7 (182-240)||(8342673-8342731)
chr7 (190-244)||(19069957-19070011)
chr7 (180-229)||(23351231-23351280)
[»] chr5 (21 HSPs)
chr5 (22-244)||(23322213-23322435)
chr5 (14-244)||(5840984-5841214)
chr5 (14-198)||(15933463-15933649)
chr5 (101-228)||(25088419-25088546)
chr5 (101-228)||(25146388-25146515)
chr5 (151-245)||(42792946-42793040)
chr5 (130-244)||(34634067-34634181)
chr5 (129-244)||(9379929-9380044)
chr5 (129-245)||(1501053-1501169)
chr5 (163-243)||(43183230-43183310)
chr5 (129-242)||(9380675-9380788)
chr5 (163-244)||(23322097-23322178)
chr5 (166-240)||(5840880-5840954)
chr5 (14-147)||(42793598-42793729)
chr5 (14-109)||(25088924-25089019)
chr5 (14-109)||(25146893-25146988)
chr5 (182-244)||(15933602-15933664)
chr5 (167-244)||(15933355-15933432)
chr5 (178-243)||(20244522-20244587)
chr5 (166-240)||(25089049-25089123)
chr5 (166-240)||(25147018-25147092)
[»] chr4 (41 HSPs)
chr4 (14-243)||(3990782-3991011)
chr4 (14-243)||(10468587-10468816)
chr4 (14-243)||(49028370-49028599)
chr4 (14-242)||(52677553-52677781)
chr4 (14-243)||(9268023-9268252)
chr4 (14-241)||(12585265-12585492)
chr4 (14-221)||(16067346-16067553)
chr4 (22-239)||(21038119-21038335)
chr4 (14-219)||(622082-622286)
chr4 (106-242)||(45667232-45667367)
chr4 (129-245)||(9450880-9450996)
chr4 (130-247)||(4437676-4437793)
chr4 (151-240)||(25225793-25225882)
chr4 (166-245)||(10286408-10286487)
chr4 (163-244)||(28450749-28450830)
chr4 (153-245)||(17931286-17931378)
chr4 (153-243)||(17932121-17932211)
chr4 (130-241)||(4438996-4439107)
chr4 (129-244)||(28451498-28451613)
chr4 (163-244)||(52677808-52677889)
chr4 (172-244)||(9449714-9449786)
chr4 (163-244)||(49028262-49028343)
chr4 (153-240)||(10202681-10202768)
chr4 (166-243)||(12585158-12585235)
chr4 (163-243)||(10468480-10468560)
chr4 (183-243)||(12315855-12315915)
chr4 (166-241)||(622316-622391)
chr4 (163-241)||(36098747-36098825)
chr4 (163-241)||(16067580-16067656)
chr4 (172-242)||(21325695-21325765)
chr4 (178-241)||(53892253-53892316)
chr4 (22-108)||(10286525-10286611)
chr4 (167-240)||(21038374-21038445)
chr4 (22-77)||(36098860-36098915)
chr4 (193-243)||(49287430-49287480)
chr4 (190-245)||(27509631-27509686)
chr4 (186-229)||(35348809-35348852)
chr4 (190-244)||(32617602-32617656)
chr4 (131-196)||(12316059-12316124)
chr4 (207-243)||(45667369-45667405)
chr4 (130-242)||(53898307-53898419)
[»] chr2 (16 HSPs)
chr2 (14-245)||(38694995-38695226)
chr2 (14-244)||(42962767-42962997)
chr2 (131-244)||(4410599-4410712)
chr2 (129-245)||(14159204-14159320)
chr2 (14-147)||(18171172-18171309)
chr2 (129-244)||(4734174-4734289)
chr2 (152-243)||(18166633-18166724)
chr2 (129-243)||(4733304-4733418)
chr2 (164-244)||(42963025-42963105)
chr2 (129-244)||(14160378-14160493)
chr2 (163-244)||(18171336-18171417)
chr2 (129-239)||(4409164-4409274)
chr2 (121-244)||(38694887-38695011)
chr2 (190-245)||(39110070-39110125)
chr2 (190-244)||(36099292-36099346)
chr2 (191-244)||(45001052-45001105)
[»] chr1 (11 HSPs)
chr1 (14-245)||(37499279-37499510)
chr1 (129-244)||(17690893-17691008)
chr1 (129-243)||(9114819-9114933)
chr1 (163-243)||(14903806-14903886)
chr1 (131-244)||(14904555-14904668)
chr1 (129-241)||(17689738-17689849)
chr1 (166-244)||(30335231-30335308)
chr1 (131-220)||(9116021-9116110)
chr1 (196-241)||(37499178-37499223)
chr1 (186-229)||(48527546-48527589)
chr1 (14-48)||(30335123-30335157)
[»] scaffold0069 (2 HSPs)
scaffold0069 (28-241)||(19897-20110)
scaffold0069 (163-241)||(20155-20232)
[»] scaffold0006 (2 HSPs)
scaffold0006 (14-242)||(93633-93860)
scaffold0006 (166-220)||(93890-93944)
[»] scaffold0008 (2 HSPs)
scaffold0008 (14-240)||(266728-266953)
scaffold0008 (163-232)||(266632-266701)
[»] chr8 (19 HSPs)
chr8 (22-147)||(18202888-18203013)
chr8 (131-244)||(10536751-10536864)
chr8 (151-242)||(18203300-18203391)
chr8 (23-117)||(30905852-30905946)
chr8 (163-241)||(30905982-30906060)
chr8 (157-244)||(10535999-10536086)
chr8 (131-242)||(32539409-32539520)
chr8 (156-242)||(30905397-30905483)
chr8 (166-243)||(18202773-18202850)
chr8 (190-243)||(9237761-9237814)
chr8 (178-219)||(32538283-32538324)
chr8 (190-245)||(10398703-10398758)
chr8 (128-230)||(5425446-5425547)
chr8 (190-247)||(5881824-5881881)
chr8 (180-229)||(15304207-15304256)
chr8 (180-229)||(15484576-15484625)
chr8 (190-242)||(4881466-4881518)
chr8 (192-244)||(9237311-9237363)
chr8 (167-227)||(29275261-29275321)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 24107380 - 24107033
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  24107380 ataaattcccaccgtcaaaaccgttaagccaatgtctaaggaggatacacattgcaagttgtcacttcgccgttcacatgtgcctatttaacgttttggc 24107281  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24107280 aaaagactgacggtgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaat 24107181  T
Q  214 aacttaagggaccaaatcattaattaagccttctccaaatatagtcaagaaagttcaagatgtgctccttcatttagaagacattaatgttaatgcagtt 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24107180 aactcaagggaccaaatcattaattaagccttctccaaatatagtcaagaaagttcaagatgtgctccttcatttagaagacattaatgttaatgcagtt 24107081  T
Q  314 atgtcagcatctttatgaaagtactttaattcttccgtctaaattttg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24107080 atgtcagcatctttatgaaagtactttaattcttccgtctaaattttg 24107033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 27865028 - 27864798
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||||||||||||||||| |||||| |||| | |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||    
T  27865028 ataaatccccaccgtcaaaaccgttaacccaatgactaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctagttaacgttttggc 27864929  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||  ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27864928 aaaagactgacagtgaggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaat 27864829  T
Q  214 aacttaagggaccaaatcattaattaagcct 244  Q
    |||||| ||||||||||||||||||||||||    
T  27864828 aacttacgggaccaaatcattaattaagcct 27864798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 38758715 - 38758943
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||| |||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  38758715 ataaatttccactgtcaaaaccgttaacccaatgtctaaggtggatacacattgcaagttgtcacatcgccgttcacatgttcctatttaacgttttggc 38758814  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    ||||| || |   ||| ||||||||||||||||| | |||||||| || ||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  38758815 aaaaggctaaaagtgaagatttatttggctaacatatactaactt-agggaccaaattataacgttgataacttatgggaccaaaatgtaaccaacaaat 38758913  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||||||||||||||    
T  38758914 aacttaagggaccaaatcattaattaagcc 38758943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 3171603 - 3171823
Alignment:
Q  21 cccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagac 120  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||| |||   |||||||||||  ||||||||||||||||||||||     
T  3171603 cccaccgtcaaaaccgttaatccaatgtctaaggtggatacacactgcaagttgtcacgtcattgttcacatgtgcttatttaacgttttggcaaaagaa 3171702  T
Q  121 tgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaa-ttgtaacattaataacttatgggaccaaaatgtaaccaacaaataactta 219  Q
    ||||| |||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||    ||||||  ||||||||||| ||||||||||||    
T  3171703 tgacggtgaggatttatttggccaacagatactaacttaagggaccaaatttgtaacattaata----atgggatgaaaatgtaaccgacaaataactta 3171798  T
Q  220 agggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||||    
T  3171799 agggaccaaatcattaattaagcct 3171823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 54446127 - 54446349
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||||||     ||||||| ||| |||||||||  ||  ||||||||||||||||    
T  54446127 ataaattctcaccgtcaaaaccgttaagccaatgtctaaggtggatacacat-----gttgtcacgtcaccgttcacacatgcatatttaacgttttggc 54446221  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggacc-aaaatgtaaccaacaaa 212  Q
    |||||| |||| |||||||||||||||||||||| | ||||||||||  |||||||||||||  |||||||||||| ||||| |||||||||| ||||||    
T  54446222 aaaagaatgacaatgaggatttatttggctaacatatactaacttaaaagaccaaattgtaatgttaataacttataggaccaaaaatgtaactaacaaa 54446321  T
Q  213 taacttaagggaccaaatcattaattaa 240  Q
    ||||||||||||||||||||||||||||    
T  54446322 taacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 19860605 - 19860826
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  19860605 ccaccgtcaaaaccgttaagccaatgtctaaattggatacacatcgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggcaaaagact 19860704  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaag 221  Q
    |||| ||||||||||||||||||| |||   ||||||||  |||||||||||||  |||||||||| || ||||||||||||||||| |||||||||||     
T  19860705 gacggtgaggatttatttggctaatagattttaacttaaaggaccaaattgtaatgttaataactt-tgagaccaaaatgtaaccaataaataacttaa- 19860802  T
Q  222 ggaccaaatcattaattaagcctt 245  Q
     ||  |||||||||||||| ||||    
T  19860803 agatgaaatcattaattaaacctt 19860826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 14812648 - 14812426
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    |||||||||||||||||| |||||||||||| |  ||||||||||| ||||||||| ||| ||||||||| ||| || |||| | |||||||||||||||    
T  14812648 ccaccgtcaaaaccgttaggccaatgtctaaggtagatacacattgtaagttgtcacgtcaccgttcacacgtgcctttttatcattttggcaaaagact 14812549  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaag 221  Q
     ||  ||||||||||| ||||| ||| | |||||| |||| ||  |||||||||| |||||||||||||||||||||||||||| || |||||||||||     
T  14812548 aaccgtgaggatttatatggctcacaaatactaacctaagggagaaaattgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaaa 14812449  T
Q  222 ggaccaaatcattaattaagcct 244  Q
     || ||||||||| |||||||||    
T  14812448 tgatcaaatcattgattaagcct 14812426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 244 - 361
Target Start/End: Original strand, 24616626 - 24616742
Alignment:
Q  244 ttctccaaatatagtcaagaaagttcaagatgtgctccttcatttagaagacattaatgttaatgcagttatgtcagcatctttatgaaagtactttaat 343  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  24616626 ttctccaaatatagtcaagaaagttcaagatgtg-tccttcatttagaagacattaatgttaatgcagttatgtcagtatctttattaaattactttaat 24616724  T
Q  344 tcttccgtctaaattttg 361  Q
     |||||||||||||||||    
T  24616725 acttccgtctaaattttg 24616742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 18026072 - 18025894
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||| ||| ||||||||||||   |||||||||||||||||||| | |    
T  18026072 ccaccgtcaaaaccgttaatccaatgtctaaggtggatacacattgcaagctgtcacgtcaccgttcacatgttcttatttaacgttttggcaaaatatt 18025973  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaac--attaataacttatgggaccaaa 198  Q
    |||| ||||||||||||| | ||||| | ||||||||| | ||||||| ||||||  |  ||||||||| |||||||||    
T  18025972 gacggtgaggatttatttagttaacaaatactaacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 18025894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 3171569 - 3171488
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3171569 gaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcct 3171488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 27865012 - 27865135
Alignment:
Q  121 tgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaa 220  Q
    ||||| || |||||||||||| | || |||  | ||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  27865012 tgacggtggggatttatttggttgacggaagatgacttaaaggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaa 27865111  T
Q  221 gggaccaaatcattaattaagcct 244  Q
    ||||||| ||||||||||||||||    
T  27865112 gggaccacatcattaattaagcct 27865135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 31596747 - 31596825
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31596747 aaatggtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 31596825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 46684210 - 46684096
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    ||||||||||||| || |||  ||||||||| |||||||  ||||  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  46684210 gatttatttggctgacggaagataacttaagggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaat 46684111  T
Q  231 cattaattaagcctt 245  Q
    |||||||||||||||    
T  46684110 cattaattaagcctt 46684096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 16908041 - 16907928
Alignment:
Q  132 atttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatc 231  Q
    ||||||||||||||||||   | | ||||| |||||||   |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16908041 atttatttggctaacagagtatgagttaagggaccaaaacataacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatc 16907942  T
Q  232 attaattaagcctt 245  Q
    ||||||||||||||    
T  16907941 attaattaagcctt 16907928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 24107407 - 24107489
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  24107407 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaattaagcctt 24107489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 21792303 - 21792433
Alignment:
Q  90 catgtgtctatttaacgttttggcaaaagactgacgatgaggatttatttggctaacagaaactaacttaagt-gaccaaattgtaacattaataactta 188  Q
    |||||| ||| ||||||||||||||||||||| | |||||    |||||||||| ||| | |||||||||||  |||||||||||||| |||||||||||    
T  21792303 catgtgcctacttaacgttttggcaaaagactaaggatga----ttatttggcttacaaatactaacttaaggagaccaaattgtaacgttaataactta 21792398  T
Q  189 tgggaccaaaatgtaaccaacaaataacttaaggg 223  Q
      |||||||||||||| ||||||||||||||||||    
T  21792399 gaggaccaaaatgtaaacaacaaataacttaaggg 21792433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 24114147 - 24114064
Alignment:
Q  278 ctccttcatttagaagacattaatgttaatgcagttatgtcagcatctttatgaaagtactttaattcttccgtctaaattttg 361  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  24114147 ctccttcatttagaaggcattaaagttaatgcagttatgtcagcatctttattaaattactttaattcttccgcctatattttg 24114064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 18025941 - 18025880
Alignment:
Q  182 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaagcc 18025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 19860571 - 19860490
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||  ||||| ||||||||||||||||    
T  19860571 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaagcct 19860490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 38758684 - 38758607
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||    
T  38758684 aaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaattaagcct 38758607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 46685537 - 46685602
Alignment:
Q  179 taataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  46685537 taataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaagcct 46685602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 11422428 - 11422379
Alignment:
Q  194 ccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11422428 ccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 11422379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 21792297 - 21792228
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatca 232  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  21792297 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 54446100 - 54446022
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||||| |||||||||||| |||  ||||||||| ||||||||||||| || ||||| |||||||||||||    
T  54446100 gaccaaattgtaacgttaataacttataggattaaaatgtaatcaacaaataactttagagaccacatcattaattaag 54446022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18026111 - 18026163
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataactta 219  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  18026111 aaatggtaacgttaataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 30385234 - 30385180
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||| |||||| |||||| |||||||||||||| | |||||||||||    
T  30385234 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcct 30385180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 42592453 - 42592399
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||| |||||| |||||| |||||||||||||| | |||||||||||    
T  42592453 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcct 42592399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 18024618 - 18024567
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||    
T  18024618 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaag 18024567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 18024922 - 18024976
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| | |||||| |||||| |||||||||||||| | |||||||||||    
T  18024922 gggaccaaaacgaaaccaaaaaataagttaagggaccaaattagtaattaagcct 18024976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 25629484 - 25629430
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| |||| ||| |||||| |||||||||||||| | |||||||||||    
T  25629484 gggaccaaaacgtaatcaaaaaataagttaagggaccaaatgagtaattaagcct 25629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 10817809 - 10817862
Alignment:
Q  192 gaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||| |||||| |||||| |||||||||||||| |  |||||||||||    
T  10817809 gaccaaaatgaaaccaaaaaataagttaagggaccaaatgaggaattaagcctt 10817862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 7584007 - 7583955
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    |||||||||||| ||| || |||||| ||||||||||||| |||| |||||||    
T  7584007 gggaccaaaatgaaacaaaaaaataagttaagggaccaaagcatttattaagc 7583955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 40941838 - 40941894
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccttc 246  Q
    |||||||||| | |||||| |||||| |||||||| ||||| | |||||||||||||    
T  40941838 gggaccaaaacgaaaccaaaaaataagttaagggatcaaatgagtaattaagccttc 40941894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 5367530 - 5367752
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  5367530 ccaccgtcaaaaccgttaacccaatgtctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggcaaaagact 5367629  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaag 221  Q
     ||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||     
T  5367630 aacggtgaggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaa- 5367728  T
Q  222 ggaccaaatcattaattaagcctt 245  Q
    ||||||||||||||||||||||||    
T  5367729 ggaccaaatcattaattaagcctt 5367752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 3659057 - 3659290
Alignment:
Q  12 agataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttg 111  Q
    ||||||||  ||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  3659057 agataaatctccaccgttaaaaccgttaacccaatgtctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttg 3659156  T
Q  112 gcaaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaa 211  Q
    |||||||||| ||| ||||||||||||||||||||| | ||||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||    
T  3659157 gcaaaagactcacggtgaggatttatttggctaacaaatactaacttaagggaccaaattgtaa-gttaataacttatgggaccaaaatgtaactaacaa 3659255  T
Q  212 ataacttaagggaccaaatcattaattaagccttc 246  Q
    |||||||||||||||||||||||||||||||||||    
T  3659256 ataacttaagggaccaaatcattaattaagccttc 3659290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 28944360 - 28944558
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    ||||||||||||||||||| | ||||||||| | | |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||    
T  28944360 ccaccgtcaaaaccgttaatctaatgtctaaggtgaatacacattgcaagttgtaacgtcactgttcacatgtgtctatttaacgttttggcaaaagact 28944459  T
Q  122 gacgatgagg----atttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataac 216  Q
     ||  ||| |    ||||||||| |||||| | ||||||||||   ||||||||||||||||||||| |||| | | |||||||||| ||| |||||||    
T  28944460 cacagtgaagatttatttatttgactaacatatactaacttaaagaaccaaattgtaacattaataatttatagaagcaaaatgtaatcaagaaataac 28944558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 8286901 - 8286787
Alignment:
Q  130 ggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    |||||||||||| | ||||||  |||||||||  || ||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||    
T  8286901 ggatttatttggttgacagaagataacttaaggaactaaaatgtaacgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaa 8286802  T
Q  230 tcattaattaagcct 244  Q
    |||||||||||||||    
T  8286801 tcattaattaagcct 8286787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 8287379 - 8287502
Alignment:
Q  121 tgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaa 220  Q
    ||||||||  ||||||||||| | || |||  ||||||||| ||||||| |||||| || |  | |||  |||| |||||||||||||||||||||||||    
T  8287379 tgacgatggagatttatttggttgacggaagataacttaagggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaacaaataacttaa 8287478  T
Q  221 gggaccaaatcattaattaagcct 244  Q
    ||||||||||||||||||||||||    
T  8287479 gggaccaaatcattaattaagcct 8287502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 3659029 - 3658951
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||| |||||||||||    
T  3659029 caaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaattaagcct 3658951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 28944324 - 28944243
Alignment:
Q  164 accaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||||||||||||||||||| | ||  |||||||||||||||||| |||||||||| || || ||||||||||||||    
T  28944324 accaaattgtaacattaataacttacgagattaaaatgtaaccaacaaatgacttaagggagcagatgattaattaagcctt 28944243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 3720115 - 3720052
Alignment:
Q  179 taataacttatgggaccaaaatgtaaccaacaaa-taacttaagggaccaaatcattaattaag 241  Q
    |||||| |||||||||||||||||||  || ||| |||||||||||||||||||||||||||||    
T  3720115 taataaattatgggaccaaaatgtaataaaaaaaataacttaagggaccaaatcattaattaag 3720052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 5367528 - 5367407
Alignment:
Q  131 gatttatttggctaacagaaactaacttaa-gtgaccaaattgtaacattaataacttatgggaccaaaatgta--------accaacaaataacttaag 221  Q
    ||||||||||| | ||||||  | |||||| | |||||||||||||  ||||||||||||| ||| ||||||||        ||||||||||||||||||    
T  5367528 gatttatttggttgacagaagatgacttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtaaccatgtaaccaacaaataacttaag 5367429  T
Q  222 ggaccaaatcattaattaagcc 243  Q
    |||||| |||| ||||||||||    
T  5367428 ggaccatatcagtaattaagcc 5367407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 9899613 - 9899560
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||||    
T  9899613 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcc 9899560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 13119207 - 13119239
Alignment:
Q  211 aataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||||||||||||||||||||||    
T  13119207 aataacttaagggaccaaatcattaattaagcc 13119239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 19048297 - 19048242
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||||| |||||| |||||| |||||||||||||  | ||||||||||||    
T  19048297 gggaccaaaatgaaaccaaaaaataagttaagggaccaaaaaagtaattaagcctt 19048242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 30859973 - 30859918
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||| | |||||| |||||| |||||||||||||| | ||||||||||||    
T  30859973 gggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctt 30859918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 29836155 - 29836209
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| |||||||| |||||| |||||||||||| | | |||||||||||    
T  29836155 gggaccaaaacgtaaccaaaaaataagttaagggaccaactgaataattaagcct 29836209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 8286566 - 8286615
Alignment:
Q  180 aataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||| ||| |||||||||||| |||||| |||||| |||||||||||||    
T  8286566 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 8286615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 4265083 - 4265313
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  4265083 ataaatccccaccgtcaaaaccgttaacccaatgtctaaagtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggc 4265182  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| |||| |    
T  4265183 aaaagactgacagtgaggatttatttggcaaacagatactaacttaatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaact 4265282  T
Q  214 aacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||||||||||    
T  4265283 aacttaagggaccaaatcattaattaagcct 4265313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 8905868 - 8905640
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  8905868 ataaattcctaccgtcaaaaccgttaagtcaatgtctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggc 8905769  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    ||||||| |||| ||||||||||||||||||||| | ||||||||  | || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8905768 aaaagaccgacggtgaggatttatttggctaacaaatactaactt-tgggatcaaattgtaacattaataacttatgagaccaaaatgtaaccaacaaat 8905670  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    |||||||| |||||||||||| ||||||||    
T  8905669 aacttaagagaccaaatcattgattaagcc 8905640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 18471730 - 18471843
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    |||||||||||||||||||   ||| ||||| ||||||| | |||  ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  18471730 gatttatttggctaacagattataagttaagggaccaaaatataatgttaataacttatgagaccaaaatgtaaccaacagataacttaagggaccaaat 18471829  T
Q  231 cattaattaagcct 244  Q
    |||||| |||||||    
T  18471830 cattaactaagcct 18471843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 18470253 - 18470138
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||| ||||||||   ||| ||||| |||||||   |||||||||||||||||| | |||||||||||||||||||||| |||||| || ||    
T  18470253 aggatttatttgactaacagattataagttaagggaccaaaacctaacattaataacttatgtggccaaaatgtaaccaacaaataatttaaggcacaaa 18470154  T
Q  229 atcattaattaagcct 244  Q
    ||||||||||||||||    
T  18470153 atcattaattaagcct 18470138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 4265099 - 4264977
Alignment:
Q  121 tgacgatgaggatttatttggctaacagaaactaacttaa-gtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataactta 219  Q
    ||||| || |||||||||||| | || |||| || ||||| | |||||||||||||  ||||||||||||| ||| ||||||| ||||| ||||||||||    
T  4265099 tgacggtggggatttatttggttgacggaaaatagcttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaaaaaataactta 4265000  T
Q  220 agggaccaaatcattaattaagc 242  Q
    |  ||||| ||||||||||||||    
T  4264999 aaagaccacatcattaattaagc 4264977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 25749390 - 25749310
Alignment:
Q  164 accaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||||||| |||||||||||||| || ||||| || ||||| ||||||| |||||||| ||||||||||||||||||    
T  25749390 accaaattgtaacgttaataacttatggaactaaaatatagccaac-aataactaaagggaccgaatcattaattaagcctt 25749310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 8328309 - 8328197
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||||| |   ||| ||||| ||| |||  ||||| |||||||||| || ||||||||| |||| || ||||||||||||||||| |    
T  8328309 aggatttatttggctaacatattataagttaagggactaaaacgtaacgttaataacttgtgagaccaaaatctaactaataaataacttaagggaccga 8328210  T
Q  229 atcattaattaag 241  Q
     ||||||||||||    
T  8328209 ttcattaattaag 8328197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 25749396 - 25749467
Alignment:
Q  173 taacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| || || |||||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaagcct 25749467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 8329046 - 8329115
Alignment:
Q  172 gtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    ||||| |||||||||| || |||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  8329046 gtaacgttaataacttttgagaccaaaatgtaaccaacaaataacttaa-agaccaattcattaattaagc 8329115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 8905898 - 8905973
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    ||||||||||| ||||||| |||||  |  ||||| ||||||||||||||||||||||| || |||||||||||||    
T  8905898 caaattgtaaccttaataatttatgaaagtaaaatataaccaacaaataacttaagggatcacatcattaattaag 8905973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 8342673 - 8342731
Alignment:
Q  182 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||||||| ||||||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  8342673 taacttatgagaccaaagtgtaaccaaaaaataacttaatggaccaattcattaattaa 8342731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 19069957 - 19070011
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||| |||||| |||||| |||||||||||||  | |||||||||||    
T  19069957 gggaccaaaatgaaaccaaaaaataagttaagggaccaaaaaagtaattaagcct 19070011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 23351231 - 23351280
Alignment:
Q  180 aataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||| ||| |||||||||||| |||||| |||||| |||||||||||||    
T  23351231 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 23351280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 23322213 - 23322435
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    ||||||||||||||||||||||||||||||| | |||||||  ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||| |    
T  23322213 ccaccgtcaaaaccgttaagccaatgtctaaggtggatacatgttgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttgacaaaagatt 23322312  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaag 221  Q
    |||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  23322313 gacggtgaggatttatttggctaacatatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaag 23322412  T
Q  222 ggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||    
T  23322413 ggaccaaatcattaattaagcct 23322435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 5840984 - 5841214
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||  ||||||||||||||| ||| ||||||||||||  ||||||||||||||| |    
T  5840984 ataaatccccaccgtcaaaaccgttaagccaatgtctaaggtggatatgcattgcaagttgtcacgtcaccgttcacatgttcctatttaacgttttgac 5841083  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||  | ||||||||||||||||||| | ||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  5841084 aaaagactgacagtaaggatttatttggctaacaaatactaacttaaagaaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaat 5841183  T
Q  214 aacttaagggaccaaatcattaattaagcct 244  Q
    || ||||| ||||||||||||||||||||||    
T  5841184 aagttaagagaccaaatcattaattaagcct 5841214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 15933463 - 15933649
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||||||||||||||||| ||||||| ||| | ||||| |||||||||||||||| ||| ||||||||||| |  ||||||||||||||||    
T  15933463 ataaatccccaccgtcaaaaccgttaacccaatgtttaaggtggataaacattgcaagttgtcacgtcaccgttcacatgcgcatatttaacgttttggc 15933562  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaac--attaataacttatgggaccaaa 198  Q
    |||||||| ||   |||||||||||||||||||||| ||||||||||| ||| ||| ||||||  |  ||||||||| |||||||||    
T  15933563 aaaagactaacagagaggatttatttggctaacagatactaacttaagggactaaaatgtaaccaacaaataacttaagggaccaaa 15933649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 25088546 - 25088419
Alignment:
Q  101 ttaacgttttggcaaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaat 200  Q
    |||| |||||| ||||||||  ||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||||| |||||||||    
T  25088546 ttaatgttttgacaaaagaccaacggtgaggatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaat 25088447  T
Q  201 gtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||||| ||||||||    
T  25088446 gtaaccaacaaataacttacgggaccaa 25088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 25146515 - 25146388
Alignment:
Q  101 ttaacgttttggcaaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaat 200  Q
    |||| |||||| ||||||||  ||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||||| |||||||||    
T  25146515 ttaatgttttgacaaaagaccaacggtgaggatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaat 25146416  T
Q  201 gtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||||| ||||||||    
T  25146415 gtaaccaacaaataacttacgggaccaa 25146388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 42793040 - 42792946
Alignment:
Q  151 actaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42793040 actaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaagcctt 42792946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 34634181 - 34634067
Alignment:
Q  130 ggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||||||||| ||||||||  |||||||||  ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |    
T  34634181 ggatttatttgactaacagagtctaacttaatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccaca 34634082  T
Q  230 tcattaattaagcct 244  Q
    |||||||||||||||    
T  34634081 tcattaattaagcct 34634067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 9380044 - 9379929
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||||| |   ||| ||||| |||||||  ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9380044 aggatttatttggctaacatattataagttaagggaccaaaacgtaacgttaataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaa 9379945  T
Q  229 atcattaattaagcct 244  Q
     |||||||||||||||    
T  9379944 ttcattaattaagcct 9379929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 1501053 - 1501169
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||| ||||| |||  ||||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| ||||||||||||||| |||    
T  1501053 aggatttatttgactaacggaatataacttaagggaccaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaataacttaagggatcaa 1501152  T
Q  229 atcattaattaagcctt 245  Q
    || ||||||||| ||||    
T  1501153 atgattaattaaacctt 1501169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 43183310 - 43183230
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43183310 gaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaagcc 43183230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 9380675 - 9380788
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||| |||||| |   ||| | ||| |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  9380675 aggatttatttgactaacatattataagtgaagggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaataacttaagggatcaa 9380774  T
Q  229 atcattaattaagc 242  Q
     |||||||||||||    
T  9380775 ttcattaattaagc 9380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 23322178 - 23322097
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  23322178 gaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaattaagcct 23322097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 5840954 - 5840880
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||    
T  5840954 caaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaattaa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 42793729 - 42793598
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||  ||| ||||||| |||||| |||||||||||   ||||||||||||||||||||||  || ||||||||||||  | ||||||| |||||||    
T  42793729 ataaattttcacagtcaaaatcgttaatccaatgtctaagatggatacacattgcaagttgtcacatcaccgttcacatgttccaatttaacattttggc 42793630  T
Q  114 aaaagactgacgatgaggatttatttggctaaca 147  Q
      |||| ||||| |||||||||||||||||||||    
T  42793629 --aagattgacggtgaggatttatttggctaaca 42793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 25089019 - 25088924
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttt 109  Q
    ||||||| ||||||||||||| ||||||||||||||||| | | |||||| ||||||||||||| ||| |||||||||||||  ||||||| ||||    
T  25089019 ataaatttccaccgtcaaaacggttaagccaatgtctaaggtgaatacacgttgcaagttgtcacgtcaccgttcacatgtgcgtatttaatgttt 25088924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 25146988 - 25146893
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttt 109  Q
    ||||||| ||||||||||||| ||||||||||||||||| | | |||||| ||||||||||||| ||| |||||||||||||  ||||||| ||||    
T  25146988 ataaatttccaccgtcaaaacggttaagccaatgtctaaggtgaatacacgttgcaagttgtcacgtcaccgttcacatgtgcgtatttaatgttt 25146893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 15933602 - 15933664
Alignment:
Q  182 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15933602 taacttaagggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaagcct 15933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 15933432 - 15933355
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| ||||||||||||| ||| ||||| ||||||||||||||  |||||||||| |||||| |||||||||    
T  15933432 aaattgtaacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgattaagcct 15933355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 20244522 - 20244587
Alignment:
Q  178 ttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    ||||||| |||||||||||||||||||||||||||||| |||||  || |||||||||||||||||    
T  20244522 ttaataatttatgggaccaaaatgtaaccaacaaataatttaagtaacaaaatcattaattaagcc 20244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 25089049 - 25089123
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||||||| |||||||||||||||  || ||||| ||||||| ||||||||||||| ||||  |||||||||||    
T  25089049 caaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaattaa 25089123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 25147018 - 25147092
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||||||| |||||||||||||||  || ||||| ||||||| ||||||||||||| ||||  |||||||||||    
T  25147018 caaattgtagcattaataacttatgacactaaaatataaccaataaataacttaaggaaccacgtcattaattaa 25147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 3990782 - 3991011
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||  || | |||| || ||| |||||||||||||||||    
T  3990782 ataaattcccaccgtcaaaaccgttaagccaatgtctaaggtggatacacattgcaagttgtcacatcacggttcgcacgtgcctatttaacgttttggc 3990881  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| ||||||||||||||||||| ||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  3990882 aaaagactgacggtgaggatttatttggctaatagatattaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaatt 3990981  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||| ||||||||||    
T  3990982 aacttaagggaccaaatcaataattaagcc 3991011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 10468587 - 10468816
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||    
T  10468587 ataaattcccaccgtcaaaaccgttaacccaatatctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaatgttttggc 10468686  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    ||| |||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  10468687 aaacgactgacggtgaggatttatttggctagcagatactaacttaacggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaat 10468786  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||| ||||||||||||    
T  10468787 aacttaagggaccaaatgattaattaagcc 10468816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 49028370 - 49028599
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| ||||||||||||||||||||  |||||||||| | |||||||||||| |||||||||  || | |||||||||| ||||||||| ||||||||    
T  49028370 ataaatccccaccgtcaaaaccgttaactcaatgtctaaagtggatacacattgtaagttgtcacatcactgttcacatgtatctatttaatgttttggc 49028469  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  49028470 aaaagactgacgctgaagatttatttggctaacaaatactaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaataaat 49028569  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||||||||||||||    
T  49028570 aacttaagggaccaaatcattaattaagcc 49028599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 52677781 - 52677553
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||  | ||||||||||| ||||||||| |||||||    
T  52677781 ataaattctcaccgtcaaaaccgttaatccaatgtctaaggtggatacacattgcaagttgtcacgtaacagttcacatgtgcctatttaacattttggc 52677682  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    || ||| ||||| ||||||||||||||||||||| | ||||||||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  52677681 aagagattgacgttgaggatttatttggctaacatatactaacttaatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaat 52677582  T
Q  214 aacttaagggaccaaatcattaattaagc 242  Q
    ||||||||||||||||| |||||||||||    
T  52677581 aacttaagggaccaaataattaattaagc 52677553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 9268252 - 9268023
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||| |||||||||||||||||| |||||| | ||||| | |||||||||||||| | | ||||||||||||   |||||| |||||| ||    
T  9268252 ataaatccccaccatcaaaaccgttaagccaacgtctaaggtggatatatattgcaagttgtcacgccaccgttcacatgtccttatttagcgttttcgc 9268153  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  9268152 aaaagactgacggtgaggatttatttggctaacaaatactaacttaagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaataaat 9268053  T
Q  214 aacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||||||||||||||    
T  9268052 aacttaagggaccaaatcattaattaagcc 9268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 12585265 - 12585492
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| | ||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  12585265 ataaatcctcactgtcaaaactgttaaaccaatgtctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggc 12585364  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    ||||||||||   ||| ||||||||||||||||| | ||||||||||| |||||||||||||  ||||||||||||| || |||||||||||||||||||    
T  12585365 aaaagactgatagtgaagatttatttggctaacatatactaacttaagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaat 12585464  T
Q  214 aacttaagggaccaaatcattaattaag 241  Q
    ||||||||||||||||||||||||||||    
T  12585465 aacttaagggaccaaatcattaattaag 12585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 16067553 - 16067346
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||| ||| ||||||||||||||||||||||||||   |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  16067553 ataaattctcactgtcaaaaccgttaagccaatgtctaagatggatacacatcgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggc 16067454  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||| ||||| |||||||||||||||||| || | ||||||||||  |||||||||||||| ||||||| |||| | || ||||||||||||||||||    
T  16067453 aaaagattgacggtgaggatttatttggctagcaaatactaacttaaaagaccaaattgtaacgttaataatttatagaactaaaatgtaaccaacaaat 16067354  T
Q  214 aacttaag 221  Q
    ||||||||    
T  16067353 aacttaag 16067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 21038335 - 21038119
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    ||||||||||||||||||||||||||||||  | ||||| |||||||||||||||  ||| | |||| ||||||  |||||||| ||||||||||||| |    
T  21038335 ccaccgtcaaaaccgttaagccaatgtctatggtggatatacattgcaagttgtcgcgtcactgttctcatgtgcatatttaacattttggcaaaagatt 21038236  T
Q  122 gacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaag 221  Q
    || | ||| ||||||||||||||||| | ||||||||||  |||||||||||||| |||||||||||| | |||||||| ||| ||||||| |||||||     
T  21038235 gatggtgatgatttatttggctaacatatactaacttaaaggaccaaattgtaacgttaataacttattgaaccaaaatataatcaacaaacaacttaa- 21038137  T
Q  222 ggaccaaatcattaatta 239  Q
    ||||||||||||||||||    
T  21038136 ggaccaaatcattaatta 21038119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 622286 - 622082
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| ||| | ||||| ||||||||||||||||||||   |||| |  |||||||||||||| ||| ||||||||||||||||||||||||||||| |    
T  622286 ataaatcccctctgtcaacaccgttaagccaatgtctaagatggattctaattgcaagttgtcacgtcaccgttcacatgtgtctatttaacgttttgac 622187  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| |||| |||||||| ||| ||| |||||| ||| ||||||||    
T  622186 aaaagactgatgatgaggatttatttggctaacaaatactaatttaagggaccaaattataacgttaataacgtat-ggatcaaaatataatcaacaaat 622088  T
Q  214 aactta 219  Q
    ||||||    
T  622087 aactta 622082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 242
Target Start/End: Complemental strand, 45667367 - 45667232
Alignment:
Q  106 gttttggcaaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaac 205  Q
    |||||||||||| | ||||| ||||||||||||||||||||||| | ||| ||||   | ||||||||||| ||||||||||||| ||||||||||||||    
T  45667367 gttttggcaaaa-attgacggtgaggatttatttggctaacagatattaaattaaaaaatcaaattgtaacgttaataacttatgagaccaaaatgtaac 45667269  T
Q  206 caacaaataacttaagggaccaaatcattaattaagc 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  45667268 caacaaataacttaagggaccaaatcattaattaagc 45667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 9450880 - 9450996
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||||||||||||   | | ||||| |||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9450880 aggatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaa 9450979  T
Q  229 atcattaattaagcctt 245  Q
    |||||||||||||||||    
T  9450980 atcattaattaagcctt 9450996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 4437793 - 4437676
Alignment:
Q  130 ggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||||||||||||||||||  |||||||||  |||||||  ||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  4437793 ggatttatttggctaacagagtctaacttaaaggaccaaaacgtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaa 4437694  T
Q  230 tcattaattaagccttct 247  Q
     |||||||||||||||||    
T  4437693 ccattaattaagccttct 4437676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 25225882 - 25225793
Alignment:
Q  151 actaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||||||||| ||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25225882 actaacttaagcgacaaaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 10286487 - 10286408
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10286487 caaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 10286408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 28450830 - 28450749
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28450830 gaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcct 28450749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 17931378 - 17931286
Alignment:
Q  153 taacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||| |||||  ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  17931378 taacttaagggaccattttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaagcctt 17931286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 17932121 - 17932211
Alignment:
Q  153 taacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||| |||||  ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  17932121 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaagcc 17932211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 4438996 - 4439107
Alignment:
Q  130 ggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||||||||  ||||||||  |||||||||| |||||||  ||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||      
T  4438996 ggatttatttaactaacagagtctaacttaagagaccaaaacgtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacg 4439095  T
Q  230 tcattaattaag 241  Q
    ||||||||||||    
T  4439096 tcattaattaag 4439107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 28451498 - 28451613
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||| ||||||||    || ||||| |||||||  ||||  |||||| |||||| |||||||||||||||||||||||||||||||||| ||    
T  28451498 aggatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaa 28451597  T
Q  229 atcattaattaagcct 244  Q
    ||||||||||||||||    
T  28451598 atcattaattaagcct 28451613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 52677808 - 52677889
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  52677808 gaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaattatgcct 52677889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 9449786 - 9449714
Alignment:
Q  172 gtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  9449786 gtaacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaagcct 9449714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 49028343 - 49028262
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  49028343 gaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaattaggcct 49028262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 10202768 - 10202681
Alignment:
Q  153 taacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    |||||||||  | ||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||    
T  10202768 taacttaaggcatcaaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 12585235 - 12585158
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||  ||||||||||||| ||| ||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  12585235 caaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaattaagcc 12585158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 10468560 - 10468480
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||| |||| ||||||   ||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  10468560 gaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaattaagcc 10468480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 12315915 - 12315855
Alignment:
Q  183 aacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  12315915 aacttatgggaccaaattgtaacctacaaataacttaaaggaccaaatcattaattaagcc 12315855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 622316 - 622391
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    ||||| |||||||||||||| ||| || | ||||||||||||||||||||||||||||| || |||||||||||||    
T  622316 caaatcgtaacattaataacatataggtctaaaatgtaaccaacaaataacttaagggatcacatcattaattaag 622391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 36098825 - 36098747
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    ||||||||| |||| ||||||| |||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||    
T  36098825 gaccaaattataacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaag 36098747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 16067580 - 16067656
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||| ||||   |||||||||||||    
T  16067580 gaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaaaggac--tatcattaattaag 16067656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 21325695 - 21325765
Alignment:
Q  172 gtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    ||||| ||||||||| ||| ||| |||||||||||||||||||| ||||| || |||||||||||||||||    
T  21325695 gtaacgttaataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaagc 21325765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 53892316 - 53892253
Alignment:
Q  178 ttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||||||||| || ||||||| | ||||||||||||  ||||||||||||||||||    
T  53892316 ttaataacttatgggacccaattgtaacctataaataacttaagaaaccaaatcattaattaag 53892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 10286525 - 10286611
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgtt 108  Q
    |||||||||||||||||||  |||||||||| | | ||| |||||||||||||||| ||| | |||||||| || ||||||| ||||    
T  10286525 ccaccgtcaaaaccgttaaatcaatgtctaaggtgaataaacattgcaagttgtcacgtcactgttcacatctgcctatttagcgtt 10286611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 21038374 - 21038445
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaa 240  Q
    ||||| |||| |||||||||||  |||| |||||||||||| |||||||||||||||| || ||||||||||||    
T  21038374 aaattataacgttaataactta--ggactaaaatgtaaccagcaaataacttaagggatcacatcattaattaa 21038445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 36098860 - 36098915
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtca 77  Q
    ||||||||||||||||||| ||||| ||||| | |||||||||||||||| |||||    
T  36098860 ccaccgtcaaaaccgttaatccaatatctaaggtggatacacattgcaagctgtca 36098915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 49287480 - 49287430
Alignment:
Q  193 accaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||||||    
T  49287480 accaaaatttaaccaacaaataactaaagagactaaatcattaattaagcc 49287430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 27509686 - 27509631
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||| | |||||| |||||| |||||||||||||| | ||||||||||||    
T  27509686 gggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctt 27509631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 35348852 - 35348809
Alignment:
Q  186 ttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    |||||||||||||||| || |||||||| |||||||||||||||    
T  35348852 ttatgggaccaaaatgaaaacaacaaattacttaagggaccaaa 35348809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 32617602 - 32617656
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| | |||||| |||||| |||||||||||||| | |||||||||||    
T  32617602 gggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcct 32617656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 12316124 - 12316059
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggacca 196  Q
    |||||| ||||||||| || | ||||||| | |||||  |||| ||||||||||||||||||||||    
T  12316124 gatttaattggctaacggagagtaacttatgggaccattttgttacattaataacttatgggacca 12316059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 45667369 - 45667405
Alignment:
Q  207 aacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||||||| |||||| |||||||||||||||    
T  45667369 aacaaataacttaaaggaccacatcattaattaagcc 45667405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 53898307 - 53898419
Alignment:
Q  130 ggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||||| |||||| ||| | | ||||||||| |||||  || | |||||||||  ||||| ||||||| | ||||  | |||||||||| | |||||||    
T  53898307 ggatttaattggctgacaaagagtaacttaagggaccattttattacattaatagtttatgagaccaaattataacttataaataacttacgagaccaaa 53898406  T
Q  230 tcattaattaagc 242  Q
    | |||||||||||    
T  53898407 ttattaattaagc 53898419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 38694995 - 38695226
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| ||||||||||||||||||||  |||||||||| | |||||||||||| |||||||||  || ||||||||||||| |||||||| ||||||||    
T  38694995 ataaatccccaccgtcaaaaccgttaactcaatgtctaaagtggatacacattgtaagttgtcacatcaccgttcacatgtgcctatttaatgttttggc 38695094  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  38695095 aaaagactgacgttgaggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaat 38695194  T
Q  214 aacttaagggaccaaatcattaattaagcctt 245  Q
    ||||||||||||||||||||||||||||||||    
T  38695195 aacttaagggaccaaatcattaattaagcctt 38695226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 42962997 - 42962767
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| ||| |  ||||| |||||||||||||||||||||     
T  42962997 ataaattcccaccgtcaaaaccgttaaaccaatgtctaaggtggacacacattgcaagttgtcacgtcacaattcacgtgtgtctatttaacgttttgga 42962898  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||| | ||||||| || ||||||| |||||||||||    
T  42962897 aaaagactgacggtgaggatttatttggctaacatatactaacttaagggaccaaattgtaacgttagtcacttatgagatcaaaatgcaaccaacaaat 42962798  T
Q  214 aacttaagggaccaaatcattaattaagcct 244  Q
    ||| |||||||||||||||||||||||||||    
T  42962797 aacctaagggaccaaatcattaattaagcct 42962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 4410599 - 4410712
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    |||||||||||||||||||  |||||||||| ||||||| |||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4410599 gatttatttggctaacagagtctaacttaagggaccaaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaat 4410698  T
Q  231 cattaattaagcct 244  Q
    ||||||||||||||    
T  4410699 cattaattaagcct 4410712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 14159320 - 14159204
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||||||||||||   | | ||||| |||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14159320 aggatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaa 14159221  T
Q  229 atcattaattaagcctt 245  Q
    |||||||||||||||||    
T  14159220 atcattaattaagcctt 14159204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 18171309 - 18171172
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgt----gtctatttaacgttt 109  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| |||    | |||||||||||||    
T  18171309 ataaattcccaccgtcaaaaccgttaaaccaatgtctaaggtggacacacattgcaagttgtcatgtcaccgttcacgtgtgccagcctatttaacgttt 18171210  T
Q  110 tggcaaaagactgacgatgaggatttatttggctaaca 147  Q
    ||| |||||| ||||| | |||||||||||||||||||    
T  18171209 tggaaaaagattgacggtaaggatttatttggctaaca 18171172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 4734174 - 4734289
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||||||||||||   ||| ||||| |||||||  ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4734174 aggatttatttggctaacagattataagttaagggaccaaaacgtaacgttaataacttataggatcaaaatgtaaccaacaaataacttaagggaccaa 4734273  T
Q  229 atcattaattaagcct 244  Q
     |||||||||||||||    
T  4734274 ttcattaattaagcct 4734289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 18166724 - 18166633
Alignment:
Q  152 ctaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18166724 ctaacttaagggaccaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcc 18166633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 4733418 - 4733304
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||||||||||||| ||   ||| ||||| |||||||  ||||  |||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  4733418 aggatttatttggctaacggattataaattaagggaccaaaacgtaatgttaataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaa 4733319  T
Q  229 atcattaattaagcc 243  Q
    |||||||||||||||    
T  4733318 atcattaattaagcc 4733304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 42963025 - 42963105
Alignment:
Q  164 accaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42963025 accaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcct 42963105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 14160378 - 14160493
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||| ||||||||||||   | | | ||| |||||||  ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  14160378 aggatttacttggctaacagagtatgagtcaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaa 14160477  T
Q  229 atcattaattaagcct 244  Q
    ||||||||||||||||    
T  14160478 atcattaattaagcct 14160493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 18171336 - 18171417
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  18171336 gaccaaattgtaattttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaagcct 18171417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 4409274 - 4409164
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    |||||||| |||||||||| ||  ||||||||| |||||||  ||||| ||||||||||||| ||||||| |||||| ||||||||| ||||| ||||||    
T  4409274 aggatttacttggctaacataatttaacttaagggaccaaaacgtaacgttaataacttatgagaccaaattgtaactaacaaataatttaagagaccaa 4409175  T
Q  229 atcattaatta 239  Q
    |||||||||||    
T  4409174 atcattaatta 4409164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 38695011 - 38694887
Alignment:
Q  121 tgacgatgaggatttatttggctaacagaaactaacttaa-gtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataactta 219  Q
    ||||| || |||||||||||| | || |||| || ||||| | |||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  38695011 tgacggtggggatttatttggttgacggaaaatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataactta 38694912  T
Q  220 agggaccaaatcattaattaagcct 244  Q
    |||||||| ||||| ||||| ||||    
T  38694911 agggaccacatcatcaattaggcct 38694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 39110125 - 39110070
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||||||    
T  39110125 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctt 39110070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 36099346 - 36099292
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| | |||||| |||||| |||||||||||||| | |||||||||||    
T  36099346 gggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcct 36099292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 45001105 - 45001052
Alignment:
Q  191 ggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||||| | |||||| |||||| |||||||||||||| | |||||||||||    
T  45001105 ggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcct 45001052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 37499279 - 37499510
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||  ||||||||||||||||||| || ||||||| | |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  37499279 ataaattttcaccgtcaaaaccgttaagtcagtgtctaaggtggatacacattgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttggc 37499378  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||||||| | | ||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  37499379 aaaagactgacggtaatgatttatttggctaacagatactaacttaagagacgaaattataacattaataacttatgagaccaaaatgtaaccaacaaat 37499478  T
Q  214 aacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||| |  ||||||||||||||||||||    
T  37499479 aacttaagaggtcaaatcattaattaagcctt 37499510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 17690893 - 17691008
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||| ||||  ||| ||||| |||||||  ||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  17690893 aggatttatttggctaatagaatataagttaagggaccaaaacgtaacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaa 17690992  T
Q  229 atcattaattaagcct 244  Q
    ||||||||||||||||    
T  17690993 atcattaattaagcct 17691008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 9114933 - 9114819
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||||||||||  |   ||| ||||| |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9114933 aggatttatttggctaacgaattataaattaagggaccaaaacgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaa 9114834  T
Q  229 atcattaattaagcc 243  Q
    |||||||||||||||    
T  9114833 atcattaattaagcc 9114819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 14903886 - 14903806
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14903886 gaccaaaacgtaacgttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 14903806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 14904555 - 14904668
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    |||||||||| ||||||||    || ||||| |||||||  ||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14904555 gatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaat 14904654  T
Q  231 cattaattaagcct 244  Q
    ||||||||||||||    
T  14904655 cattaattaagcct 14904668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 17689849 - 17689738
Alignment:
Q  129 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaa 228  Q
    ||||||||||| |||||| |||  ||| ||||| ||| ||| |||||| || |||||||||| |||||||  |||| |||||||||||||||||||||||    
T  17689849 aggatttatttagctaacggaatataagttaagggactaaaatgtaacgtttataacttatgagaccaaac-gtaatcaacaaataacttaagggaccaa 17689751  T
Q  229 atcattaattaag 241  Q
    |||||||||||||    
T  17689750 atcattaattaag 17689738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 30335231 - 30335308
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||||||||| ||||||||||||| ||| ||| |||||  |||||||||||||| |||||| ||||||||||||||||    
T  30335231 caaattgtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaa-ggaccacatcattaattaagcct 30335308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 9116021 - 9116110
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaa 220  Q
    ||||||||| |||||| ||   ||| ||||| |||||||  | ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  9116021 gatttatttagctaacggattataagttaagagaccaaaacgaaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 37499223 - 37499178
Alignment:
Q  196 aaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  37499223 aaaatgtaagcaacaaataacttaagggaccaaatcattaattaag 37499178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 48527589 - 48527546
Alignment:
Q  186 ttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||    
T  48527589 ttatgggaccaaaatgtaaacaacaaattacttaggggaccaaa 48527546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 30335157 - 30335123
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgt 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  30335157 ataaatttccaccgtcaaaaccgttaagccaatgt 30335123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 20110 - 19897
Alignment:
Q  28 tcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagactgacgat 127  Q
    ||||||||||||| | ||||||||| |  ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||  ||||||||||||| |    
T  20110 tcaaaaccgttaacctaatgtctaaggtagatacacgttgcaagttgtcacgtcaccgttcacatgtgcctatttaacgttttaccaaaagactgacggt 20011  T
Q  128 gaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggacca 227  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20010 gaggatttatttggctaacagatactaacttaagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggacca 19911  T
Q  228 aatcattaattaag 241  Q
    ||||||||||||||    
T  19910 aatcattaattaag 19897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 20155 - 20232
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||||| ||||||| |||||| |  ||||| ||||||||||||||||||| |||||| |||||||||||||    
T  20155 gaccaaattgtaacgttaataaattatggaattaaaatataaccaacaaataacttaa-ggaccacatcattaattaag 20232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 93860 - 93633
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||| |||||||||||||||||||| ||||||||||| |  |||| || ||||||||||| | ||| ||||||||||||| |||||||||||||||||    
T  93860 ataaatccccaccgtcaaaaccgttaatccaatgtctaaggtagatatacgttgcaagttgttacgtcaccgttcacatgtgcctatttaacgttttggc 93761  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||||| ||| ||| ||||||||||||||||| | | ||||||||| ||| |||||||||| ||||||| |||||||||||||||||||| |||||||    
T  93760 aaaagactcacggtgaagatttatttggctaacaaatagtaacttaagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaat 93661  T
Q  214 aacttaagggaccaaatcattaattaagc 242  Q
    ||||||| ||| |||||||||||||||||    
T  93660 aacttaa-ggatcaaatcattaattaagc 93633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 93890 - 93944
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaa 220  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||    
T  93890 caaattgtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaa 93944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 266728 - 266953
Alignment:
Q  14 ataaattcccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggc 113  Q
    |||||||||||| |||||||||||||| ||||||||||| | | ||||||||| |||||||||| ||| || |||||||||  ||||||||||||||||     
T  266728 ataaattcccac-gtcaaaaccgttaacccaatgtctaaggtgaatacacattacaagttgtcacgtcaccattcacatgttcctatttaacgttttggg 266826  T
Q  114 aaaagactgacgatgaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaat 213  Q
    |||||  | ||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |||  ||||||||||||| ||||||||||||||||||||||    
T  266827 aaaaggttaacggtgaagatttatttggctaacagatactaacttaagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaat 266926  T
Q  214 aacttaagggaccaaatcattaattaa 240  Q
    ||||||| |||||||||||||||||||    
T  266927 aacttaaaggaccaaatcattaattaa 266953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 266701 - 266632
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatca 232  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  266701 gaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaaggaaccacatca 266632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 18202888 - 18203013
Alignment:
Q  22 ccaccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaagact 121  Q
    |||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  18202888 ccaccgtcaaaaccgttaagtcaatgtctaaggtggatacacgttgcaagttgtcacgtcaccgttcacatgtgtctatttaacgttttggcaaaagatt 18202987  T
Q  122 gacgatgaggatttatttggctaaca 147  Q
    |||| |||||||||||||||||||||    
T  18202988 gacggtgaggatttatttggctaaca 18203013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 10536751 - 10536864
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    |||||||||| ||||||||   ||| ||| | |||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  10536751 gatttatttgactaacagactataagttaggggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaat 10536850  T
Q  231 cattaattaagcct 244  Q
    ||||||||||||||    
T  10536851 cattaattaagcct 10536864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 18203300 - 18203391
Alignment:
Q  151 actaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  18203300 actaacttaagagactaaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaagc 18203391  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 30905946 - 30905852
Alignment:
Q  23 caccgtcaaaaccgttaagccaatgtctaatgaggatacacattgcaagttgtcatgtcgccgttcacatgtgtctatttaacgttttggcaaaa 117  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||| || |||||||| ||||||| ||||    
T  30905946 caccgtcaaaaccgttaagccaatgtctaaggtgggtacacattgcaagttgtcatgtcaccgttcacatatgcctatttaatgttttgggaaaa 30905852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 30905982 - 30906060
Alignment:
Q  163 gaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 241  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  30905982 gaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaattaag 30906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 10536086 - 10535999
Alignment:
Q  157 ttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    ||||| |||||||  ||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10536086 ttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaagcct 10535999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 32539409 - 32539520
Alignment:
Q  131 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaat 230  Q
    |||||||||||||||| ||   ||| ||||| ||| ||| |||||  ||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  32539409 gatttatttggctaacggattataagttaagggacaaaaatgtaatgttaataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaat 32539508  T
Q  231 cattaattaagc 242  Q
    ||||||||||||    
T  32539509 cattaattaagc 32539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 30905483 - 30905397
Alignment:
Q  156 cttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    |||||| |||||||||||||| ||||||| |||| | |  ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  30905483 cttaagggaccaaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaagc 30905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 18202850 - 18202773
Alignment:
Q  166 caaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||  ||| | || ||||||||||||    
T  18202850 caaattgtaacattaataacttatgagacgaaaatgtaatcaacaaataacttaatagactacattattaattaagcc 18202773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 9237761 - 9237814
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 243  Q
    |||||||||| |||||||| |||||| |||||||||||||| | ||||||||||    
T  9237761 gggaccaaaacgtaaccaaaaaataagttaagggaccaaatgaataattaagcc 9237814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 32538324 - 32538283
Alignment:
Q  178 ttaataacttatgggaccaaaatgtaaccaacaaataactta 219  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  32538324 ttaataacttatgagatcaaaatgtaaccaacaaataactta 32538283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 10398703 - 10398758
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcctt 245  Q
    |||||||||| | |||||| |||||| |||||||||||||| | ||||||||||||    
T  10398703 gggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctt 10398758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 5425547 - 5425446
Alignment:
Q  128 gaggatttatttggctaacagaaactaacttaagtgaccaaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggacca 227  Q
    |||||||||||||| ||||  |  |||||||||  ||||||| |||||||||||||| ||||||||| ||| |  || |||||||||| ||||  |||||    
T  5425547 gaggatttatttggttaacgaagtctaacttaaa-gaccaaaatgtaacattaataagttatgggactaaattaaaaacaacaaataaattaaatgacca 5425449  T
Q  228 aat 230  Q
    |||    
T  5425448 aat 5425446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 5881824 - 5881881
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccttct 247  Q
    |||||||||| ||||| || |||||| ||| |||||||||| | ||||||||||||||    
T  5881824 gggaccaaaacgtaacaaaaaaataagttaggggaccaaatgaataattaagccttct 5881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15304207 - 15304256
Alignment:
Q  180 aataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||| ||| |||||||||||| |||||| |||||| |||||||||||||    
T  15304207 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 15304256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15484576 - 15484625
Alignment:
Q  180 aataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaa 229  Q
    ||||| ||| |||||||||||| |||||| |||||| |||||||||||||    
T  15484576 aataagttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaa 15484625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 4881466 - 4881518
Alignment:
Q  190 gggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 242  Q
    |||||||||| | |||||| |||||| |||||||||||||| | |||||||||    
T  4881466 gggaccaaaacgaaaccaaaaaataaattaagggaccaaatgaataattaagc 4881518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 9237363 - 9237311
Alignment:
Q  192 gaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcct 244  Q
    |||||||||| |||||| |||||| |||||||||||||  | |||||||||||    
T  9237363 gaccaaaatgaaaccaaaaaataaattaagggaccaaaagagtaattaagcct 9237311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 29275321 - 29275261
Alignment:
Q  167 aaattgtaacattaataacttatgggaccaaaatgtaaccaacaaataacttaagggacca 227  Q
    ||||| |||| ||||||| ||||| ||| | ||| ||||||||||||||||||||| ||||    
T  29275321 aaattataaccttaataaattatgagactagaatataaccaacaaataacttaaggaacca 29275261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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