View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_high_36 (Length: 358)
Name: NF1739_high_36
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 29602433 - 29602086
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29602433 |
ctttggccctaagaacattggggagtttattgttcttaaaagatgatatagaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
29602334 |
T |
|
| Q |
101 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29602333 |
agaagatgatattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttc |
29602234 |
T |
|
| Q |
201 |
aaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaaccaatttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29602233 |
aaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaatcaatttt |
29602134 |
T |
|
| Q |
301 |
tgcacgagctacaatcaagatctttccttcaagatttctatgtctctg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29602133 |
tgcacgagctacaatcaagatctttccttcaagatttctatgtctctg |
29602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29750861 - 29751208
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29750861 |
ctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
29750960 |
T |
|
| Q |
101 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
29750961 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacgatgttttgcctgcttctccctctttgtaaaagacttc |
29751060 |
T |
|
| Q |
201 |
aaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaaccaatttt |
300 |
Q |
| |
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| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
29751061 |
cactttagtaattattctgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaatcaatttt |
29751160 |
T |
|
| Q |
301 |
tgcacgagctacaatcaagatctttccttcaagatttctatgtctctg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29751161 |
tgcacgagctacaatcaagatctttccttcaagatttctatgtctctg |
29751208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 29743824 - 29744161
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaa----aagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccac |
96 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29743824 |
ctttggccctaagaacattggggagttcattgttcttaattaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccac |
29743923 |
T |
|
| Q |
97 |
aaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaaga |
196 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |
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|
| T |
29743924 |
aaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtcttatttgaaacgatgttttgcctgcttctccctctttgtaaaaga |
29744023 |
T |
|
| Q |
197 |
cttcaaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaaccaa |
296 |
Q |
| |
|
||| |||| || | || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
29744024 |
ctttgtatttagtaataatcatgtcactgtgctttgggaggctcttgatcttctcccatcaccaaacaagggtaaaaccttggaagatgtcggcaattaa |
29744123 |
T |
|
| Q |
297 |
tttttgcacgagctacaatcaagatctttccttcaaga |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
29744124 |
tttttgcacgagctacaatcaagatctttccttcaaga |
29744161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 35157981 - 35158315
Alignment:
| Q |
3 |
ttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaag |
102 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35157981 |
ttggccctaaggacattggggagttcgctgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaag |
35158080 |
T |
|
| Q |
103 |
aagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttcaa |
202 |
Q |
| |
|
| || || ||||| || || |||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||| | |
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| T |
35158081 |
acgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttcca |
35158180 |
T |
|
| Q |
203 |
atttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagatgtcggtaaccaatttttg |
302 |
Q |
| |
|
|| | || | | | ||| || |||||||| |||| |||||||| |||||||||||||||| | || ||| ||||| | || ||| | ||||| |
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|
| T |
35158181 |
tttcaacagttttcatacaattgtactctgggaggcacttggttttcttcaatcaccaaacaagggtgacactttgaaagatattggcaacaagttttta |
35158280 |
T |
|
| Q |
303 |
cacgagctacaatcaagatctttccttcaagattt |
337 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
35158281 |
aaagagctacggtcaagatcttttcttcaagattt |
35158315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 49352469 - 49352752
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| | ||||||||| |||| ||||||||||||||||| | || |||| |||||||||||||||||||||||| |
|
|
| T |
49352469 |
ctttggccctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaa |
49352568 |
T |
|
| Q |
101 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttc |
200 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
49352569 |
agaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagaacttt |
49352668 |
T |
|
| Q |
201 |
aaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagat |
284 |
Q |
| |
|
| ||| || || | ||| | |||||| |||| ||| |||| ||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
49352669 |
gatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttggaagat |
49352752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 49341093 - 49341374
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| ||||||||||||| |
|
|
| T |
49341093 |
ctttggccctaagaacattggggagttctctattcttaaaagatgatatagaagagtggaagtttaacagggacagtgaaatttgggatttaccacaaaa |
49341192 |
T |
|
| Q |
101 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttc |
200 |
Q |
| |
|
||| || || |||||| ||||| ||||| ||||| |||||| ||||| ||||||||||||| ||||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
49341193 |
agatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagtacttt |
49341290 |
T |
|
| Q |
201 |
aaatttgttacttatactgtcactgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagat |
284 |
Q |
| |
|
|||| ||| || | ||| | |||||| |||| ||| ||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
49341291 |
ccatttattaattttgatgttagtgtgctatgggtggcatttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
49341374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 32783800 - 32783614
Alignment:
| Q |
1 |
ctttggccctaagaacgttggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaa |
100 |
Q |
| |
|
|||||||||||||||| | ||||||||| | ||| |||||| |||| | ||||||||||||||| | || |||| ||| |||||||||||||| ||||| |
|
|
| T |
32783800 |
ctttggccctaagaacatcggggagttctctattcctaaaagttgatgtggaagagtggaagtttatcagagacagtgaaatttggaatttacctcaaaa |
32783701 |
T |
|
| Q |
101 |
agaagatgatattttgcctgctctcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctctt |
187 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
32783700 |
agaagatgacattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacgatgttttacttgcttctccctctt |
32783614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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