View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_45 (Length: 312)
Name: NF1739_high_45
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 899171 - 899425
Alignment:
| Q |
17 |
agaagtagttagtgtacatttagtttcacttataaatgagtgaatattgattatagaggtgtagaattgctttagagtaaatttattttgtctcaaaatt |
116 |
Q |
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| T |
899171 |
agaagtagttagtgtacatttagtttcacttataaatgagtgaatattgattatagaggtgtagaattgctttagagtaaatttattttgtctcaaaatt |
899270 |
T |
|
| Q |
117 |
taattctaatttgaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgtttaattagtcattttggttttacgtattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899271 |
taattctaatttgaacctacaatttggaacttttgattttagaatcaacttttacattaagatttattgtttaattagtcattttggttttacgtattta |
899370 |
T |
|
| Q |
217 |
aataaatccctttagtttcaaaaattaaatgtacatcactctaattcaatactca |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899371 |
aataaatccctttagtttcaaaaattaaatgtacatcactctaattcaatactca |
899425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 4799336 - 4799298
Alignment:
| Q |
270 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
308 |
Q |
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| T |
4799336 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4799298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 4804316 - 4804278
Alignment:
| Q |
270 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
308 |
Q |
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| T |
4804316 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
4804278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 4800493 - 4800455
Alignment:
| Q |
270 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
308 |
Q |
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|
| T |
4800493 |
catcgtttgatgcaccaatcgatatctttcttttctctc |
4800455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 22332128 - 22332166
Alignment:
| Q |
270 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
308 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22332128 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
22332166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 23834053 - 23834015
Alignment:
| Q |
270 |
catcgtttgatgcaccaatcggtatctttcttctctctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
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|
| T |
23834053 |
catcgtttgatgcaccaatcggtatctttcttttctctc |
23834015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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