View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_47 (Length: 305)
Name: NF1739_high_47
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 6010976 - 6010698
Alignment:
| Q |
8 |
ccaagaatatccccatcaggtccaatcaacccaacattagaagaagatccaattctctctttagtctcatcatcaatagacaaaacaataggaagtgaca |
107 |
Q |
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| T |
6010976 |
ccaacaatatccccatcaggtccaatcaacccaacattagaagaagatccaattctctctttagtctcatcatcaatagacaaaacaataggaagtgaca |
6010877 |
T |
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| Q |
108 |
tattaacaaaagaaccatcattcaacctaagtgaattaaaatgcaaactttgaagatattcattttccctcatgaaacctttcaaaggactagcccaacc |
207 |
Q |
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| T |
6010876 |
tattaacaaaagaaccatcattcaacctaagtgaattaaaatgcaaactttgaagatattcattttccctcatgaaacctttcaaaggactagcccaacc |
6010777 |
T |
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| Q |
208 |
ttcaccaatcacatgcacccattcataatcaacttttgttagtttcacattaggaagtgacttagcttcaagtaccttg |
286 |
Q |
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| T |
6010776 |
ttcaccaattacatgcacccattcataatcaacttttgttagtttcacattaggaagtgacttagcttcaagtaccttg |
6010698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 46333169 - 46333245
Alignment:
| Q |
74 |
tcatcatcaatagacaaaacaataggaagtgacatattaacaaaagaaccatcattcaacctaagtgaattaaaatg |
150 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| | ||||||||||| ||||| |
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| T |
46333169 |
tcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatg |
46333245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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