View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_48 (Length: 299)

Name: NF1739_high_48
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_48
NF1739_high_48
[»] chr8 (4 HSPs)
chr8 (1-298)||(12833180-12833477)
chr8 (161-210)||(29342175-29342224)
chr8 (36-102)||(7918447-7918510)
chr8 (1-29)||(14926935-14926963)
[»] chr4 (4 HSPs)
chr4 (1-102)||(42121494-42121591)
chr4 (167-218)||(17823020-17823071)
chr4 (60-101)||(18628565-18628606)
chr4 (141-193)||(32920509-32920561)
[»] chr2 (5 HSPs)
chr2 (170-228)||(39567774-39567832)
chr2 (2-55)||(43910966-43911019)
chr2 (145-192)||(43965245-43965292)
chr2 (3-81)||(5781696-5781771)
chr2 (143-191)||(43808485-43808533)
[»] chr3 (6 HSPs)
chr3 (34-101)||(40665436-40665500)
chr3 (1-60)||(25925787-25925846)
chr3 (173-218)||(36587873-36587918)
chr3 (1-29)||(22667492-22667520)
chr3 (1-29)||(22724131-22724159)
chr3 (1-29)||(27294435-27294463)
[»] chr7 (3 HSPs)
chr7 (1-101)||(529382-529479)
chr7 (157-192)||(1431435-1431470)
chr7 (60-104)||(35267366-35267410)
[»] chr5 (7 HSPs)
chr5 (165-218)||(6938850-6938903)
chr5 (35-104)||(37611215-37611281)
chr5 (35-104)||(37787945-37788011)
chr5 (157-223)||(26516175-26516241)
chr5 (141-194)||(4991054-4991107)
chr5 (34-104)||(11457103-11457169)
chr5 (157-193)||(20982262-20982298)
[»] chr1 (4 HSPs)
chr1 (154-205)||(47885132-47885183)
chr1 (1-55)||(5276343-5276397)
chr1 (157-213)||(24263266-24263322)
chr1 (1-29)||(43371844-43371872)
[»] chr6 (3 HSPs)
chr6 (1-80)||(6536975-6537051)
chr6 (60-104)||(2205612-2205656)
chr6 (34-88)||(4420663-4420714)
[»] scaffold0159 (1 HSPs)
scaffold0159 (3-81)||(27028-27103)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 12833477 - 12833180
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833477 cataagcacttgtgagactgtttgagagaacatatgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaac 12833378  T
Q  101 aattatacgtaaacaatttaacttaatttgatcttgcatgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtgaat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833377 aattatacgtaaacaatttaacttaatttgatcttgcgtgataaaaattgctcattcataaacacttatatgataagcccttatgctataagctgtgaat 12833278  T
Q  201 taaactgtttatcaaaaccgggctttatatagcaaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12833277 taaactgtttatcaaaaccgggctttatatagcaaattctatcaaggtaagtactaacggttacaatcaatcactaactaacataacagaaagtataa 12833180  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 29342224 - 29342175
Alignment:
Q  161 aacacttatatgataagcccttatgctataagctgtgaattaaactgttt 210  Q
    ||||||||||||||||| | ||||||||||||  || |||||||||||||    
T  29342224 aacacttatatgataagtcattatgctataagtagttaattaaactgttt 29342175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 7918447 - 7918510
Alignment:
Q  36 gacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaa 102  Q
    |||||||||||||||||||| |||   |||||||| ||||||||||| ||||| || | ||||||||    
T  7918447 gacatgttcataagctgtttccaa---cttatttcaataagctctccaagatagcttacgaaaacaa 7918510  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14926935 - 14926963
Alignment:
Q  1 cataagcacttgtgagactgtttgagaga 29  Q
    |||||||||||||||||||||||||||||    
T  14926935 cataagcacttgtgagactgtttgagaga 14926963  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42121591 - 42121494
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaac 100  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    ||||||||||| | ||| ||||| ||||| || ||||||||    
T  42121591 cataagcatttgtgagactgtttgagagaacttatgacatgttcataagctgttt----cagcttatttccacaagttctccaagatagctcatgaaaac 42121496  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 17823071 - 17823020
Alignment:
Q  167 tatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 218  Q
    ||||||||||||||||||||||| |||||  |||||| ||||||||| ||||    
T  17823071 tatatgataagcccttatgctatgagctgcaaattaagctgtttatccaaac 17823020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 18628565 - 18628606
Alignment:
Q  60 cagcttatttctataagctctcctagataactaatgaaaaca 101  Q
    ||||||||||| ||||||||||| |||||||| |||||||||    
T  18628565 cagcttatttccataagctctccaagataacttatgaaaaca 18628606  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 32920509 - 32920561
Alignment:
Q  141 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagc 193  Q
    |||||||| ||| || |||||||||||||||||||  |||| |||||||||||    
T  32920509 ataaaaatagcttatccataaacacttatatgatataccctgatgctataagc 32920561  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 39567832 - 39567774
Alignment:
Q  170 atgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggctttat 228  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  39567832 atgataagcgcttatgcaataagctgtgaattaagctgtttatccaaaccgggccttat 39567774  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 43910966 - 43911019
Alignment:
Q  2 ataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgttt 55  Q
    ||||||| |||||||||| |||||||||||  |||||||||||||||| |||||    
T  43910966 ataagcatttgtgagactatttgagagaacttatgacatgttcataagttgttt 43911019  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 43965245 - 43965292
Alignment:
Q  145 aaattgctcattcataaacacttatatgataagcccttatgctataag 192  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||    
T  43965245 aaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 5781771 - 5781696
Alignment:
Q  3 taagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctctc 81  Q
    ||||||||||||| |||||||| |||| |  ||||||||| ||||| ||||||    ||||||||||| ||||||||||    
T  5781771 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttt---tcagcttatttccataagctctc 5781696  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 43808533 - 43808485
Alignment:
Q  143 aaaaattgctcattcataaacacttatatgataagcccttatgctataa 191  Q
    |||||| ||| || ||||||||||||||||||| || ||||||||||||    
T  43808533 aaaaatagcttatacataaacacttatatgatacgcgcttatgctataa 43808485  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 40665500 - 40665436
Alignment:
Q  34 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaaca 101  Q
    |||||||||||||||||||||| ||   |||||||| |||||||||||| |||||||| |||||||||    
T  40665500 atgacatgttcataagctgttttca---gcttatttttataagctctccaagataacttatgaaaaca 40665436  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25925846 - 25925787
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaac 60  Q
    ||||||||||||| | ||||||| |||||||  |||||||||||||||||||||| ||||    
T  25925846 cataagcacttgtaacactgttttagagaacttatgacatgttcataagctgttttcaac 25925787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 36587918 - 36587873
Alignment:
Q  173 ataagcccttatgctataagctgtgaattaaactgtttatcaaaac 218  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaac 36587873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22667520 - 22667492
Alignment:
Q  1 cataagcacttgtgagactgtttgagaga 29  Q
    |||||||||||||||||||||||||||||    
T  22667520 cataagcacttgtgagactgtttgagaga 22667492  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22724159 - 22724131
Alignment:
Q  1 cataagcacttgtgagactgtttgagaga 29  Q
    |||||||||||||||||||||||||||||    
T  22724159 cataagcacttgtgagactgtttgagaga 22724131  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27294463 - 27294435
Alignment:
Q  1 cataagcacttgtgagactgtttgagaga 29  Q
    |||||||||||||||||||||||||||||    
T  27294463 cataagcacttgtgagactgtttgagaga 27294435  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 529479 - 529382
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaac 100  Q
    ||||| |||||||||| || |||| ||||||  |||||| ||||||||||||||| |||||   |||||  ||||||||||| ||||| || ||||||||    
T  529479 cataaacacttgtgaggctatttgggagaacttatgacaagttcataagctgttttcaaca---tattttcataagctctccaagatagcttatgaaaac 529383  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 1431435 - 1431470
Alignment:
Q  157 cataaacacttatatgataagcccttatgctataag 192  Q
    |||||||||||||||||||||| |||||||||||||    
T  1431435 cataaacacttatatgataagcacttatgctataag 1431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 35267410 - 35267366
Alignment:
Q  60 cagcttatttctataagctctcctagataactaatgaaaacaatt 104  Q
    ||||||||||||||||||||||| |||||||| |  |||||||||    
T  35267410 cagcttatttctataagctctccaagataacttaaaaaaacaatt 35267366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 6938850 - 6938903
Alignment:
Q  165 cttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaac 218  Q
    ||||||||||||||  |||||||||||||||  |||||||||||||||| ||||    
T  6938850 cttatatgataagcgtttatgctataagctgataattaaactgtttatccaaac 6938903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 37611215 - 37611281
Alignment:
Q  35 tgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 104  Q
    ||||||||||||||||||||| ||   | ||||||| ||||||||||| ||||| || ||||||||||||    
T  37611215 tgacatgttcataagctgttttca---ggttatttccataagctctccaagatagcttatgaaaacaatt 37611281  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 37787945 - 37788011
Alignment:
Q  35 tgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 104  Q
    ||||||||||||||||||||| ||   | ||||||| ||||||||||| ||||| || ||||||||||||    
T  37787945 tgacatgttcataagctgttttca---ggttatttccataagctctccaagatagcttatgaaaacaatt 37788011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 26516241 - 26516175
Alignment:
Q  157 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatcaaaaccgggc 223  Q
    ||||| |||||||||||||||| ||||||||||||||  | ||||||  |||||||| |||| ||||    
T  26516241 cataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggc 26516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 4991054 - 4991107
Alignment:
Q  141 ataaaaattgctcattcataaacacttatatgataagcccttatgctataagct 194  Q
    |||||||| ||| || || ||||||||||||||||| | |||||||||||||||    
T  4991054 ataaaaatagcttatacacaaacacttatatgataatcgcttatgctataagct 4991107  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 11457169 - 11457103
Alignment:
Q  34 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagataactaatgaaaacaatt 104  Q
    ||||||||| ||||||||||||    ||  ||||||||||||||||||| ||||||||  |||||||||||    
T  11457169 atgacatgtccataagctgttt----catattatttctataagctctccaagataacttttgaaaacaatt 11457103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 20982262 - 20982298
Alignment:
Q  157 cataaacacttatatgataagcccttatgctataagc 193  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  20982262 cataagcacttatatgataagcacttatgctataagc 20982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 47885132 - 47885183
Alignment:
Q  154 attcataaacacttatatgataagcccttatgctataagctgtgaattaaac 205  Q
    |||||||| || ||||||||||||| ||||||||||||||||  ||||||||    
T  47885132 attcataagcaattatatgataagcgcttatgctataagctgcaaattaaac 47885183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5276397 - 5276343
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgttt 55  Q
    ||||| |||||||||||||||||  ||||||  |||||||||||||||| |||||    
T  5276397 cataatcacttgtgagactgtttatgagaacttatgacatgttcataagttgttt 5276343  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 24263266 - 24263322
Alignment:
Q  157 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatc 213  Q
    |||||||||||||||| ||| |  |||||||||||||  | ||||||||||||||||    
T  24263266 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 24263322  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43371844 - 43371872
Alignment:
Q  1 cataagcacttgtgagactgtttgagaga 29  Q
    |||||||||||||||||||||||||||||    
T  43371844 cataagcacttgtgagactgtttgagaga 43371872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6537051 - 6536975
Alignment:
Q  1 cataagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctct 80  Q
    ||||||||||||||| ||||  || ||||||  |||||||||||||||| |||||    ||||||||||| |||||||||    
T  6537051 cataagcacttgtgacactgcatgggagaacttatgacatgttcataagttgttt---tcagcttatttccataagctct 6536975  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 2205612 - 2205656
Alignment:
Q  60 cagcttatttctataagctctcctagataactaatgaaaacaatt 104  Q
    ||||||||||| ||||||||||| ||||| || ||||||||||||    
T  2205612 cagcttatttccataagctctccaagatagcttatgaaaacaatt 2205656  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 4420714 - 4420663
Alignment:
Q  34 atgacatgttcataagctgtttacaacagcttatttctataagctctcctagata 88  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||| |||||    
T  4420714 atgacatgttcataagctgttt---tcagcttatttccataagctctccaagata 4420663  T

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Target: scaffold0159 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 27103 - 27028
Alignment:
Q  3 taagcacttgtgagactgtttgagagaacacatgacatgttcataagctgtttacaacagcttatttctataagctctc 81  Q
    ||||||||||||| |||||||| |||| |  ||||||||| ||||| ||||||    ||||||||||| ||||||||||    
T  27103 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttt---tcagcttatttccataagctctc 27028  T

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