View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_50 (Length: 297)
Name: NF1739_high_50
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 5640004 - 5639725
Alignment:
| Q |
18 |
ggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttattcttctaagttgtgtacattatattttgtaaatccaatgcca |
117 |
Q |
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| T |
5640004 |
ggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttatttttctaagttgtgtacattatattttgtaaatccaatgcca |
5639905 |
T |
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| Q |
118 |
cttatgctatcctcaaattgcaaaacctctttaaagcaatgttccttaggattatcatgttagcnnnnnnncaattaaagtcatctggccatgttccttg |
217 |
Q |
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| T |
5639904 |
cttatgctatcctcaaattgcaaaacctctttaaagcaatgttccttaggattatcatgttagcattttttcaattaaactcatctggccatgttccttg |
5639805 |
T |
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| Q |
218 |
cttgaacttccctcataaaaaatgttcattgtctggacttgttgtgtaagtggcagtattattctcgattaatttctttt |
297 |
Q |
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| T |
5639804 |
cttgaacttccctcataaaaaatgttcattgtctggacttgttgtgtaagtggcagtattattctcgattaatttctttt |
5639725 |
T |
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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 9390282 - 9390140
Alignment:
| Q |
18 |
ggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttattcttctaagttgtgtacattatattttgtaaatccaatgcca |
117 |
Q |
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| T |
9390282 |
ggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgcca |
9390183 |
T |
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| Q |
118 |
cttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
160 |
Q |
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| T |
9390182 |
cttatgctatcctcccattgcaaaacctctttaaaacaatgtt |
9390140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1338116 - 1337974
Alignment:
| Q |
18 |
ggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttattcttctaagttgtgtacattatattttgtaaatccaatgcca |
117 |
Q |
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|||||||||||||||||||||| ||||| || |||| || ||||| || |||||| || || |||||||||||||||||||||||||| | ||||||| |
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| T |
1338116 |
ggtgggacgaaattgtgtccacggttgtaacaagggccgagcctcataatcaggttgttatttgaagttgtgtacattatattttgtaaaactaatgcca |
1338017 |
T |
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| Q |
118 |
cttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
160 |
Q |
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| T |
1338016 |
cttatgttatcctcccattgcaaaacctctttaaaacaatgtt |
1337974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 31939929 - 31939787
Alignment:
| Q |
18 |
ggtgggacgaaattgtgtccacagttgtgacccgggcggaacctcacaaccaggttattcttctaagttgtgtacattatattttgtaaatccaatgcca |
117 |
Q |
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||||||||||||||||||| || ||||| || |||| || ||||| || ||||||||| || |||||||||||||||||||||||||| | ||||||| |
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| T |
31939929 |
ggtgggacgaaattgtgtctactgttgtaacaagggctgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgcca |
31939830 |
T |
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| Q |
118 |
cttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
160 |
Q |
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| T |
31939829 |
ctaatgttatcctcccattgcaaaacctctttaaaacaatgtt |
31939787 |
T |
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