View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_60 (Length: 271)
Name: NF1739_high_60
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35167522 - 35167761
Alignment:
| Q |
1 |
ttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaacgaagtagagatatagagaaatgatgagataaagaaataggtgatatagaaga |
100 |
Q |
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| T |
35167522 |
ttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaacgaagtagagatatagagaaatgatgagataaagaaataggtgatatagaaga |
35167621 |
T |
|
| Q |
101 |
ataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatgtttctccacattatgcatttcgtttccttccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35167622 |
ataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatgtttctccacattgtgcatttcgtttccttccttt |
35167721 |
T |
|
| Q |
201 |
tcgttggaaatgtgaagcactgataatattaacttctatt |
240 |
Q |
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| T |
35167722 |
tcgttggaaatgtgaagcactgataatattaactactatt |
35167761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 12228361 - 12228104
Alignment:
| Q |
1 |
ttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaacgaagtagagatatagagaaatgatgagataaagaaataggtgatatagaaga |
100 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
12228361 |
ttcatctatgaattatctacataaaatttgaacaaaaacattgaaaacgaagtagagatatagagaaaaaatgagataaagaaata---gatgtagaaga |
12228265 |
T |
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| Q |
101 |
ataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatg-tttctccacattatgcatttcgtttccttcctt |
199 |
Q |
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| T |
12228264 |
ataagtaagaaagttaaaattggactgaatatgcatgcatggtggtaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttcctt |
12228165 |
T |
|
| Q |
200 |
ttcgttggaaatgtgaagcactgataatattaacttctattcgatgcagttactattttattca |
263 |
Q |
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| T |
12228164 |
ttctttggaaatgtgaagcac---taatactaacttcaatacaatgcaattactattttattca |
12228104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 45099979 - 45099772
Alignment:
| Q |
1 |
ttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaacgaagtagagatatagagaaatgatgagataaagaaataggtgatatagaaga |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||| |
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| T |
45099979 |
ttcatctatgaattatctacataaaatttgaacaaaaacattgaaaacgaagtagagatatagagaaagaatgagataaataaata---gatgtagaaga |
45099883 |
T |
|
| Q |
101 |
ataagtaagaaagttaaaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatg-tttctccacattatgcatttcgtttccttcctt |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| ||| |||||||||||||||| |
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| T |
45099882 |
ataagtaagaaagttaaaattggactgaatatgcatgcatggtggcaaaatgacatacctcatatgttttcttcacattgtgcctttcgtttccttcctt |
45099783 |
T |
|
| Q |
200 |
ttcgttggaaa |
210 |
Q |
| |
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||| ||||||| |
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| T |
45099782 |
ttctttggaaa |
45099772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 17904421 - 17904511
Alignment:
| Q |
117 |
aaattggagtgaatatgcatgcatggtggcaaaatgaactacctgatatgtttctccacattatgcatttcgtttccttccttttcgttgg |
207 |
Q |
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|||||| ||||||||||||| |||||| ||||||||||||||| | ||||||||||||||| ||| |||| ||||||||||||| |||| |
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| T |
17904421 |
aaattgcagtgaatatgcatacatggttgcaaaatgaactaccacaaatgtttctccacattttgcctttcacttccttccttttctttgg |
17904511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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