View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_66 (Length: 260)
Name: NF1739_high_66
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 40087657 - 40087889
Alignment:
| Q |
11 |
taattctgcatctacaatttcaaacttcgtaactgaatctttaaaagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaa |
110 |
Q |
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| T |
40087657 |
taattctgcatctacaatttcaaacttcgtaactgaatctttaaaagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaa |
40087756 |
T |
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| Q |
111 |
cctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaa |
210 |
Q |
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| T |
40087757 |
cctgtgggtatttcgaaggatgatatattgtcaaagactggattacttgagcaaataaatatcacagctgatagaagtgactacttgtggtactcattaa |
40087856 |
T |
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| Q |
211 |
ggtatacaagcctccaaatttgaaagatatttt |
243 |
Q |
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| T |
40087857 |
ggtatacaagcctccaaatttgaaagatatttt |
40087889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 40061810 - 40062042
Alignment:
| Q |
11 |
taattctgcatctacaatttcaaacttcgtaactgaatctttaaaagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaa |
110 |
Q |
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| T |
40061810 |
taattctgcatctgcaatttcaaacttcgtaactaaatcttcaaaagaagatatcagttctttagaaacttctagttcaaaatggagttggataaacgaa |
40061909 |
T |
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| Q |
111 |
cctgtgggtatttcgaaggatgatatattgtctaagactggattacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaa |
210 |
Q |
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| T |
40061910 |
cctgtgggtatttcgaaggatgatatattttcaaaaactggattacttgagcaaataaatatcaccgctgatagaagtgactacttgtggtactcattaa |
40062009 |
T |
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| Q |
211 |
ggtatacaagcctccaaatttgaaagatatttt |
243 |
Q |
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| T |
40062010 |
ggtatacaagcctccaaatttgaaagatatttt |
40062042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 40079991 - 40080176
Alignment:
| Q |
57 |
gaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactggattac |
156 |
Q |
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| T |
40079991 |
gaagatatcagttctttagaaacttctagttcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactggattac |
40080090 |
T |
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| Q |
157 |
ttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattt |
242 |
Q |
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| T |
40080091 |
ttgagcaaataaataccacagctgatagaagtgattatttgtggtactcattaaggtacacaagcctccaaatttgaaagatattt |
40080176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 22013690 - 22013633
Alignment:
| Q |
159 |
gagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtata |
216 |
Q |
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| T |
22013690 |
gagcaaataaacacgacggctgatagaagtgactacttatggtactcattaaggtata |
22013633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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