View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_7 (Length: 585)
Name: NF1739_high_7
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 51826904 - 51827157
Alignment:
| Q |
11 |
acaatatccataacaaacaaagatggctcaacaggaagaaatgttgaaacaactcatgaaggccacccgtattagctagcattcaagagatgaagctgaa |
110 |
Q |
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| T |
51826904 |
acaaaatccataacaaacaaagatggctcaacaggaagaaatgttgaaacaactcatgaagtccacccatattagctagcattcaagagatgaagttgaa |
51827003 |
T |
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| Q |
111 |
aaggaaaccgtgcagaaagaatgaaaaataat---gagtataaaaaattgaggcagattggcctattgtcacggtaagatagatcactcaaggaaaaaac |
207 |
Q |
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| T |
51827004 |
aaggaaaccgtgcagaaagaatgaaaaataatgaggagtataaaaaattgaggcagattggcctattgtcacggtaagatagattactcaaggaaaaaac |
51827103 |
T |
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| Q |
208 |
gctattgtgaatacaatttatgattagagatcaaattcatacttatggaaatag |
261 |
Q |
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| T |
51827104 |
gctattgtgaatacaatttatgattagagatcaaattcatactaatggaaatag |
51827157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 348 - 494
Target Start/End: Original strand, 51827264 - 51827417
Alignment:
| Q |
348 |
ttgaatttaagaatgacaaaaattagttacaggaatatttcaaatcataattacaaccttagctaatagaactaagttagatctattacatagt------ |
441 |
Q |
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| T |
51827264 |
ttgaatttaagaatgacaaaaattaattacaggaataattcaaatcataattacaactttagctaatagaactaagttagatctattacatagtcttagc |
51827363 |
T |
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| Q |
442 |
-cttaggaactgcacaaattgtaaaatgagaactagctaattaagaggccgatc |
494 |
Q |
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| T |
51827364 |
ccttaggaactgcacaaattgtaaaatgagaactagctaattaagaggccgatc |
51827417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 51827450 - 51827517
Alignment:
| Q |
521 |
ggttaaactatttaacactgcgatttctctta---tatttactaatatttacgttgatttagcaccta |
585 |
Q |
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| T |
51827450 |
ggttaaactatttaacactgcgatttctcttatactatttactaatatttacgttgatttagcaccta |
51827517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 51824200 - 51824264
Alignment:
| Q |
521 |
ggttaaactatttaacactgcgatttctcttatatttactaatatttacgttgatttagcaccta |
585 |
Q |
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| T |
51824200 |
ggttaaactacttaaaactgcaattgctctcatatttactgatatttacgttgatttagcaccta |
51824264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 51824087 - 51824159
Alignment:
| Q |
365 |
aaaaattagttacaggaa-tatttcaaatcataattaca-accttagctaatagaactaagttagatctatta |
435 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| ||| | ||||||||||| |
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| T |
51824087 |
aaaaattaattacaggaaatatttcaaatcataattacacccctaagctaatagacctaggatagatctatta |
51824159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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