View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_high_71 (Length: 255)
Name: NF1739_high_71
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31730355 - 31730598
Alignment:
| Q |
1 |
gagtcaacaatgattggtgaaaagtggtattaaattttccacaaccttagaaagaaaggtcatgtggggtctaaacgtgcttgacttagtgtatgaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31730355 |
gagtcaacaatgattggtgaaaagtggtagtaaattttccacaaccttagaaagaaaggtcatgtggggtctaaacgtgcttgacttagtgtatgaaaag |
31730454 |
T |
|
| Q |
101 |
catcctcctatattgcaaaacataaaacaatactatattaagagaagcatcaaatattgtgctttactttgaatatgaatttctgatacatatagttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31730455 |
catcctcctatattgcaaaacataaaacaatactatattaagagaagcatcaaatattgtgctttactttgaatatgaatttctgatacatatagttcca |
31730554 |
T |
|
| Q |
201 |
aattcatatctttgtctgaatccaaattcacaataaaatatatt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31730555 |
aattcatatctttgtctgaatccaaattcacaataaaatatatt |
31730598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University