View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_79 (Length: 249)
Name: NF1739_high_79
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_79 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 21061959 - 21061729
Alignment:
| Q |
20 |
ttgtgtctattttttg-tataagactgttttggttatgcatattaattagacaaagcatattaaatatatgatgctcttgaaaaacttcttctactttat |
118 |
Q |
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| T |
21061959 |
ttgtttctattttttggtataagaccgttttggttatgcatattaattagacaaagcatattaaatatatgatgctcttgaaaaacttcttctactttat |
21061860 |
T |
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| Q |
119 |
taaaaaataattttgttgagacaacttcgaacaacaacaaatttaggtatgagaggggtggtc-tggggagtaatcaaagagccttcctgtgggtgatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21061859 |
taaaaaataattttgttgagacaacttcgaacaacaacaaatttaggtatgagaggggtggtcttggggagtaatcaaagagccttcctgtgggtgatgt |
21061760 |
T |
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| Q |
218 |
ctggaagtctgggaatcaaggaacatttgtt |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21061759 |
ctggaagtctgggaatcaaggaacatttgtt |
21061729 |
T |
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