View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_high_87 (Length: 243)
Name: NF1739_high_87
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_87 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41848 - 42076
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41848 |
aaacaccagtatgttggctaattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaatt |
41947 |
T |
|
| Q |
101 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41948 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
42047 |
T |
|
| Q |
201 |
tagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42048 |
tagaatctaataaagtaatataacataac |
42076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35178 - 35406
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35178 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaatt |
35277 |
T |
|
| Q |
101 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35278 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
35377 |
T |
|
| Q |
201 |
tagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
35378 |
tagaatataataaagtaatataacataac |
35406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27445510 - 27445282
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27445510 |
aaacaccagtatgttggctaattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaatt |
27445411 |
T |
|
| Q |
101 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27445410 |
agcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatca |
27445311 |
T |
|
| Q |
201 |
tagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27445310 |
tagaatctaataaagtaatataacataac |
27445282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20909486 - 20909713
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattact-ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaat |
99 |
Q |
| |
|
|||||||| | ||| |||||||| |||||||||||| || ||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
20909486 |
aaacaccaatgtgtaggctaattcctgcttcagagttcc--atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaat |
20909583 |
T |
|
| Q |
100 |
tagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaaga-atgaaggaaataatcgat |
198 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| | ||||||||| || ||| | | || | | ||||||| || |
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|
| T |
20909584 |
tagggaaattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaaga-tgcagattttactatacatatataaggaaaataattaat |
20909682 |
T |
|
| Q |
199 |
catagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |
|
|
| T |
20909683 |
catagaatatgataaagtaatataacataac |
20909713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20923934 - 20924161
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattact-ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaat |
99 |
Q |
| |
|
|||||||| | ||| |||||||| |||||||||||| || ||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
20923934 |
aaacaccaatgtgtaggctaattcctgcttcagagttcc--atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaat |
20924031 |
T |
|
| Q |
100 |
tagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaaga-atgaaggaaataatcgat |
198 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| | ||||||||| || ||| | | || | | ||||||| || |
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|
| T |
20924032 |
tagggaaattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaaga-tgcagattttactatacatatataaggaaaataattaat |
20924130 |
T |
|
| Q |
199 |
catagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |
|
|
| T |
20924131 |
catagaatatgataaagtaatataacataac |
20924161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42312600 - 42312827
Alignment:
| Q |
1 |
aaacaccagtatgttggctaattgctgcttcagagtgccctattact-ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaat |
99 |
Q |
| |
|
|||||||| | ||| |||||||| |||||||| ||| || ||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
42312600 |
aaacaccaatgtgtaggctaatttctgcttcatagttcc--atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaat |
42312697 |
T |
|
| Q |
100 |
tagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaaga-atgaaggaaataatcgat |
198 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| |||||||||| ||||| ||| | |||||||||||| ||| | | || | | ||||||| || |
|
|
| T |
42312698 |
tagggaaattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaaga-tgcagatttaactatacatatataaggaaaataattaat |
42312796 |
T |
|
| Q |
199 |
catagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| |
|
|
| T |
42312797 |
catagaatatgataaagtaatataaaataac |
42312827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 8333338 - 8333308
Alignment:
| Q |
11 |
atgttggctaattgctgcttcagagtgccct |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8333338 |
atgttggctaattgctgcttcagagtgccct |
8333308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 11504856 - 11504647
Alignment:
| Q |
19 |
taattgctgcttcagagtgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtg |
118 |
Q |
| |
|
|||||||||||| |||||||| | || | ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
11504856 |
taattgctgctttagagtgccat-ttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg |
11504758 |
T |
|
| Q |
119 |
cataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaat-gaaggaaataatcgatcatagaatctaataaagta |
217 |
Q |
| |
|
|||||||| |||||| || |||| ||||| ||||| | | |||||||||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |
|
|
| T |
11504757 |
cataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaactataaaaaatataaggaaataattaatca-agaatatgataaagta |
11504659 |
T |
|
| Q |
218 |
atataacataac |
229 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
11504658 |
atctaacataac |
11504647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 41326430 - 41326607
Alignment:
| Q |
48 |
ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatc |
147 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
41326430 |
ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagca---atgatgttttggaatc |
41326526 |
T |
|
| Q |
148 |
ctcaaacaaaaattgcagatttaaccataaaga-atgaaggaaataatcgatcatagaatctaataaagtaatataacataac |
229 |
Q |
| |
|
||||| ||| | ||||||||| | ||| | | || | | ||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
41326527 |
atcaaataaaga-tgcagattt-tctatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataac |
41326607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 11909949 - 11909979
Alignment:
| Q |
11 |
atgttggctaattgctgcttcagagtgccct |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11909949 |
atgttggctaattgctgcttcagagtgccct |
11909979 |
T |
|
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