View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_9 (Length: 575)
Name: NF1739_high_9
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 24356936 - 24357475
Alignment:
| Q |
13 |
attattctcatttattggtttactatgggcgatgacatggtcgtatcaagttacagatgatccttcggaaagcaatttcatcagcagatcagaactaaga |
112 |
Q |
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| T |
24356936 |
attattctcatttattggtttactatgggcgatgacatggtcgtatcaagttacagatgatccttcggaaagcaattttatcaacagatcagaactaaga |
24357035 |
T |
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| Q |
113 |
ttgatccaagctggaaaaactgcttctccaaagaagagtaacaagcttcctcctataggccttattttatcaaaattgccatcatgggctataatatttg |
212 |
Q |
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| T |
24357036 |
ttgatccaagctggaaaaactgcttctccaaagaagagtaacaagcttcctcctataggccttattttatcaaaattgccatcatgggctataatatttg |
24357135 |
T |
|
| Q |
213 |
ccaatgcaactaacaattgggtgagttttatttgcttttgtgtgaagataagaacttgcttgatatcatgaatttaattttaagcatactgattttgacc |
312 |
Q |
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| T |
24357136 |
ccaatgcaactaacaattgggtgagttttatttgcttttgagtgaagataagaacttgcttgatatcatgaatttaattttaagcatactgattttgacc |
24357235 |
T |
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| Q |
313 |
ttgtttaatttgcagggttactttgttcttctctcgtggatgccggtttatttcaaaagtgtaattactttcttactttgttcttgttacttattaatta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24357236 |
ttgtttaatttgcagggttactttgttcttctctcgtggatgccggtttatttcaaaagtgtaattactttcttactttgttcttgttacttattaatta |
24357335 |
T |
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| Q |
413 |
taataataaacaacttaccaacattatgttgcactgagtgaaacttgacttgaatcccctaatcatggtttcggttcgagccttgtgaatggtaaaaatg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24357336 |
taataataaacaacttaccaacattatgttgcactgagtgaaacttgacttgaatcccctaattatggtttcggttcgagccttgtgaatggtaaaaatg |
24357435 |
T |
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| Q |
513 |
tgattcggaccgtaggcctaactaaaggcggtcttcctgatactcc |
558 |
Q |
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||||||| || |||||||||||||||||||||||||||||| |
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| T |
24357436 |
tgattcgaac------cctaactaaaggcggtcttcctgatactcc |
24357475 |
T |
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