View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_90 (Length: 240)
Name: NF1739_high_90
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_90 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 44996545 - 44996418
Alignment:
| Q |
110 |
cattaatggggaaacaatgatagtaaagaatggggttactatttactatttcatgagtgacgagatgtgaagcagaagcagtgatgcagggatcaaagta |
209 |
Q |
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| T |
44996545 |
cattaatggggaaacaatgatagtaaagaatggggttactatttactatttcatgagtgacgagatgtgaagcagaagcagtgatgcagggatcaaagta |
44996446 |
T |
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| Q |
210 |
cgtacatctgcaagggttgcaggttgtt |
237 |
Q |
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| T |
44996445 |
cgtacagctgcaagggttgcaggttgtt |
44996418 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 44996644 - 44996573
Alignment:
| Q |
11 |
cagagaaaatctcactgaggtttttagctgtttataatacagaagagagactagctcgttaaggaaacagac |
82 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44996644 |
cagagaaaatctcactgaggtttttagctgtttgtaatacagaagagagactagctcgttaaggaaacagac |
44996573 |
T |
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