View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_93 (Length: 238)

Name: NF1739_high_93
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_93
NF1739_high_93
[»] chr8 (14 HSPs)
chr8 (1-214)||(21438666-21438878)
chr8 (34-183)||(4912757-4912905)
chr8 (1-183)||(4900351-4900529)
chr8 (87-183)||(4889269-4889365)
chr8 (6-183)||(4997089-4997256)
chr8 (6-175)||(4737439-4737596)
chr8 (87-183)||(4682161-4682257)
chr8 (87-180)||(4775828-4775921)
chr8 (87-175)||(4726951-4727039)
chr8 (87-183)||(4689738-4689834)
chr8 (87-183)||(4716280-4716376)
chr8 (88-183)||(4704261-4704356)
chr8 (34-157)||(4874561-4874684)
chr8 (91-183)||(10448095-10448187)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21438878 - 21438666
Alignment:
Q  1 ttactattccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaaccaggaatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21438878 ttactattccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaa-gtatatatggaaatggaaccaaccaggaatttg 21438780  T
Q  101 tcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcataattaggttagattaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21438779 tcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcataattaggttagattaag 21438680  T
Q  201 ggcggcctcgggta 214  Q
    ||||||||||||||    
T  21438679 ggcggcctcgggta 21438666  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 4912905 - 4912757
Alignment:
Q  34 aattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaaccaggaatttgtcttcaagtggactgagagggaatatatcatct 133  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | | |||| ||||||||| |    
T  4912905 aattcaagaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaa-cagggatttgtcttcaagtggattaaaagggcatatatcatat 4912807  T
Q  134 tacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    | ||| |||||||||||||| |||||| |||||||||||||| |||||||    
T  4912806 tccatatcaaagctcacaatattacaatacttgtgagttcctcatctcat 4912757  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 4900529 - 4900351
Alignment:
Q  1 ttactattccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaaccaggaatttg 100  Q
    |||| |||||||||||||||  |||||| |   | |||||||||||||||| | |||||||| ||| | || | || ||||||||||||||||| |||||    
T  4900529 ttacaattccttaaataaactgtatgcata---acttcaaaaacttcaattgtgctctgactgaaa-gaatgtttgaaaatggaaccaaccagggatttg 4900434  T
Q  101 tcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||| ||| |||| | |||||||||| ||| || |||||||| ||||||||  |||||| ||||||| |||||||    
T  4900433 tcttcaagtggattgacaggggagatatcatcttccatatcgaagctcactatgttacagtacttgtaagttcctaatctcat 4900351  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 4889365 - 4889269
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||||||||||||||||| ||| |||| | |||||||| | ||| ||||||||||| ||||||||| |||||||||||||| |||||||    
T  4889365 caaccaggaatttgtcttcaagtggattgacaggggagatatcatcatccatatcaaagctcactatgttacaatacttgtgagttcctaatctcat 4889269  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 4997089 - 4997256
Alignment:
Q  6 attccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaaccaggaatttgtcttc 105  Q
    ||||||||||||||||||||||| |   ||||||||||||| |||||||||||||  | |   ||||| |||||||| ||||    ||||||||||||||    
T  4997089 attccttaaataaaccatatgcata---aattcaaaaacttgaattatcctctgaaatta---tatatttggaaatgaaacc----aggaatttgtcttc 4997178  T
Q  106 aagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    ||||||| ||| |||| | ||||||||||  || ||||||||| | ||||||||  |||||||||||||| |||||||    
T  4997179 aagtggattgacaggggagatatcatcttctatatcaaagctctctatgttacagtacttgtgagttcctaatctcat 4997256  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 4737439 - 4737596
Alignment:
Q  6 attccttaaataaaccatatgcaaatataattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaaccaaccaggaatttgtcttc 105  Q
    ||||||||||||||||||||||| |   |||||||||||||||||||||||||||  |     | ||| ||||||  |||||    ||||||||||||||    
T  4737439 attccttaaataaaccatatgcata---aattcaaaaacttcaattatcctctgaagt-----tttatttggaaactgaacc----aggaatttgtcttc 4737526  T
Q  106 aagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttcct 175  Q
    ||||||| ||| |||| | |||||||||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  4737527 aagtggattgacaggggagatatcatcttccatatcaaagctcactatgttgcaatacttgtgagttcct 4737596  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 4682161 - 4682257
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||||||||||||||||| ||| |||  | |||||||||| ||| ||||||||||| ||||||||  |||||||||||||| |||||||    
T  4682161 caaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctcactatgttacagtacttgtgagttcctaatctcat 4682257  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 4775921 - 4775828
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatct 180  Q
    |||||||||||||||||||||||||| ||| |||  | |||||||||| ||| |||||||| || ||||||||| |||||||||||||| ||||    
T  4775921 caaccaggaatttgtcttcaagtggattgacaggagagatatcatcttccatatcaaagctaactatgttacaatacttgtgagttcctaatct 4775828  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 4726951 - 4727039
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttcct 175  Q
    |||||||||||||||||||||||||| ||| |||| | |||||||||  ||| ||||||||||| ||||| ||| ||||||||||||||    
T  4726951 caaccaggaatttgtcttcaagtggattgacaggggagatatcatctgccatatcaaagctcactatgttgcaatacttgtgagttcct 4727039  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 4689738 - 4689834
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||||||||||||||||| ||| |||| | ||| |||||| ||| ||||||||| | |||||| |  |||||||||||||| |||||||    
T  4689738 caaccaggaatttgtcttcaagtggattgacaggggagatagcatctttcatatcaaagctcgctatgttagagtacttgtgagttcctaatctcat 4689834  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 4716280 - 4716376
Alignment:
Q  87 caaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||||| ||||||||||| ||| |||| | ||| |||||| ||||||||||||||| |||||| |  ||||||||||| || |||||||    
T  4716280 caaccaggaatttggcttcaagtggattgacaggggagataccatcttccatctcaaagctcactatgttagagtacttgtgagtttctaatctcat 4716376  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 4704261 - 4704356
Alignment:
Q  88 aaccaggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    ||||||||||||||||||||||||  ||| |||| | |||||||||| ||| | |||| |||| || |||||  |||||||||||||| |||||||    
T  4704261 aaccaggaatttgtcttcaagtgggttgacaggggagatatcatcttccatattaaagttcaccatattacagtacttgtgagttcctaatctcat 4704356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 4874684 - 4874561
Alignment:
Q  34 aattcaaaaacttcaattatcctctgacttaaaagtatatatggaaatggaacc-aaccaggaatttgtcttcaagtggactgagagggaatatatcatc 132  Q
    ||||||| ||| ||||||||||||| ||  |||  ||||| || |||||||||| ||| |||||||||||||||  |||| ||| |||| | ||||||||    
T  4874684 aattcaacaacctcaattatcctctaacagaaac-tatatttgaaaatggaacccaactaggaatttgtcttcatctggattgacagggcagatatcatc 4874586  T
Q  133 ttacatctcaaagctcacaatgtta 157  Q
    || ||||||||| ||||| ||||||    
T  4874585 tttcatctcaaatctcactatgtta 4874561  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 10448095 - 10448187
Alignment:
Q  91 caggaatttgtcttcaagtggactgagagggaatatatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 183  Q
    |||||||||||||||||||||| |||  ||  | ||| || ||| ||| ||||||||||| ||||||||  | |||||||||||| |||||||    
T  10448095 caggaatttgtcttcaagtggattgactggtcagatagcaccttccatatcaaagctcactatgttacagtatttgtgagttcctaatctcat 10448187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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