View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_94 (Length: 238)
Name: NF1739_high_94
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_94 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31730248 - 31730028
Alignment:
| Q |
1 |
tgtaatggtcgttcacataatatatgttatttgaataatccttctagtaatgctataatgtattaaaccacctaatgaacaaaaacattaggctatattc |
100 |
Q |
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| T |
31730248 |
tgtaatggtcgttcacataatatatgttattagaataatccttctagtaatgctataatgtattaaaccacctaatgaacaaaaacattaggctatattc |
31730149 |
T |
|
| Q |
101 |
gaaacgatggaacaaaagacaaaaacaatggataataaaccataacatagtccctaaaatatataacatcggtcaatttagttaaatgtaaataagataa |
200 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
31730148 |
gacacgatggaacaaaagacaaaaactttggataataaaccataacatagtccctaaaatatataaaatcggtcaatttaatt-aatgtaaataagataa |
31730050 |
T |
|
| Q |
201 |
taaaaactaaattgacggattt |
222 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
31730049 |
taaaaattaaattgacggattt |
31730028 |
T |
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