View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_96 (Length: 235)
Name: NF1739_high_96
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 5996686 - 5996468
Alignment:
| Q |
3 |
aacccgccaacccagtttgcatcagcagtcagaataaaaacttccacctgcaagattaaaattgatgttaagctactgcgaagtaaatctcagaaaaaga |
102 |
Q |
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|||||||| | |||||||||||||||||||| | ||||||||| |||| || | |||||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
5996686 |
aacccgcccaaccagtttgcatcagcagtcaaagtaaaaacttgcacccgcgacattaaaatggacgttaagctagtgcgaagtaaatctcagaaaaaga |
5996587 |
T |
|
| Q |
103 |
taatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttacaataccattagggtccattgtaaaggttttggatggtaactcttt |
202 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5996586 |
taatctgtgcagaagccagtggaaactttgttgacttcatgtttagcttccttacaataccattagggtccattgtaaaggtcttggatggtaactcttt |
5996487 |
T |
|
| Q |
203 |
tgttggatgtgttgataat |
221 |
Q |
| |
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||||||||||||||||||| |
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| T |
5996486 |
tgttggatgtgttgataat |
5996468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 5993960 - 5993741
Alignment:
| Q |
3 |
aacccgccaacccagtttgcatcagcagtcagaataaaaac-ttccacctgcaagattaaaattgatgttaagctactgcgaagtaaatctcagaaaaag |
101 |
Q |
| |
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||||| |||| |||||||||||||||||||||| |||| | || ||| | | ||| |||| || ||||||||| ||||||||||||| ||||||| | |
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| T |
5993960 |
aacccaccaaaccagtttgcatcagcagtcagagtaaagccgttgcacgagtgacattgaaatggaagttaagctagtgcgaagtaaatcgcagaaaatg |
5993861 |
T |
|
| Q |
102 |
ataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttacaataccattagggtccattgtaaaggttttggatggtaactctt |
201 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
5993860 |
atcatctttgcagaaaccagtgaaaactttgttgacttcatttttagtttatttacaataccattagggtttattgtaaagcttttggatggtaactctt |
5993761 |
T |
|
| Q |
202 |
ttgttggatgtgttgataat |
221 |
Q |
| |
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||||||||||| |||||||| |
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| T |
5993760 |
ttgttggatgttttgataat |
5993741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 5631794 - 5631956
Alignment:
| Q |
58 |
ttaaaattgatgttaagctactgcgaagtaaatctcagaaaaagataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttac |
157 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||| ||||| |||| ||| || | |
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| T |
5631794 |
ttaaaatggatgttaagcttgcgcgaagtaaatctcagaaaaaaataatcttcgcagaagcgagtgaaaactttgttgatttcatttttaccttcctcgc |
5631893 |
T |
|
| Q |
158 |
aataccattagggtccattgtaaaggttttggatggtaactcttttgttggatgtgttgataa |
220 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5631894 |
aataccattagggtccgttgtaaagcttttggatggtaactctttcgttggatgtgttgataa |
5631956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 5446785 - 5446623
Alignment:
| Q |
59 |
taaaattgatgttaagctactgcgaagtaaatctcagaaaaagataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttaca |
158 |
Q |
| |
|
|||||| ||||||||| || | ||||||| ||||||||||||||||||||||| |||| ||| | | ||||||| |||||| |||||||| ||||| |
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| T |
5446785 |
taaaatggatgttaaggtagttcgaagtatatctcagaaaaagataatctttgtagaagccaacggtgattttgttggcttcatttttagcttccttacc |
5446686 |
T |
|
| Q |
159 |
ataccattagggtccattgtaaaggttttggatggtaactcttttgttggatgtgttgataat |
221 |
Q |
| |
|
|| |||||||| |||||||||||| ||||||||||||| ||| ||| ||||||||||| |||| |
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|
| T |
5446685 |
atgccattaggatccattgtaaagcttttggatggtaattctattgctggatgtgttggtaat |
5446623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 5488990 - 5489125
Alignment:
| Q |
86 |
taaatctcagaaaaagataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttacaataccattagggtccattgtaaaggtt |
185 |
Q |
| |
|
|||||| |||||||||| |||| |||||||| ||| |||| | |||||||||||||| |||||||||||||| || |||||||| |||||||||||| || |
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| T |
5488990 |
taaatcacagaaaaagacaatcattgcagaagccaatgaagattttgttgacttcatctttagctttcttaccatgccattaggatccattgtaaagctt |
5489089 |
T |
|
| Q |
186 |
ttggatggtaactcttttgttggatgtgttgataat |
221 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| |
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|
| T |
5489090 |
ttgggaccgaactcttttgctggatgtgttggtaat |
5489125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 5436139 - 5436001
Alignment:
| Q |
83 |
aagtaaatctcagaaaaagataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttacaataccattagggtccattgtaaag |
182 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| || | | |||||||||||||| || ||||| ||||| | |||||||| ||||||||||| |
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| T |
5436139 |
aagtaaatctcagaaaaatataatctttgcagaaaccaatggagattttgttgacttcattttaagcttccttacggtgccattaggctccattgtaaaa |
5436040 |
T |
|
| Q |
183 |
gttttggatggtaactcttttgttggatgtgttgataat |
221 |
Q |
| |
|
|||| | | ||||||||||| ||||||||||| |||| |
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|
| T |
5436039 |
cttttaggagctaactcttttgctggatgtgttggtaat |
5436001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 5458054 - 5457933
Alignment:
| Q |
60 |
aaaattgatgttaagctactgcgaagtaaatctcagaaaaagataatctttgcagaatccagtgaaaactttgttgacttcatgtttagctttcttacaa |
159 |
Q |
| |
|
|||||||||||||| || | | |||||||||| | ||||| ||| ||||||||||| | | || | | |||||||||||||| |||||||| ||| | |
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|
| T |
5458054 |
aaaattgatgttaaagtaattcaaagtaaatctaaaaaaaatatagtctttgcagaaactaatggagattttgttgacttcatttttagcttccttgcgg |
5457955 |
T |
|
| Q |
160 |
taccattagggtccattgtaaa |
181 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
5457954 |
tgccattagggtcagttgtaaa |
5457933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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