View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_99 (Length: 231)
Name: NF1739_high_99
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_99 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25740066 - 25740285
Alignment:
| Q |
1 |
attatcttcaacagattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatcttttaggat |
100 |
Q |
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| T |
25740066 |
attatcttcaacacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatcttttaggat |
25740165 |
T |
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| Q |
101 |
gaacactgcatgctttaaaggaagaaataaaactcatggactaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaagggtagatct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740166 |
gaacactgcatgctttaaaggaagaaataaaaatcatagactaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaagggtagatct |
25740265 |
T |
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| Q |
201 |
gcaacatgaatgcatcttcc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
25740266 |
gcaacatgaatgcatcttcc |
25740285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 25732391 - 25732566
Alignment:
| Q |
1 |
attatcttcaacagattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccataaaacagaatgtatcagcaatgatct--tttagg |
98 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | | |||||| |
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| T |
25732391 |
attatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttagg |
25732490 |
T |
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| Q |
99 |
atgaacactgcatgctttaaaggaagaaataaaactcatggactaagaaatatagagtattaaagagaatggaaaa |
174 |
Q |
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| T |
25732491 |
atgaacactgcattatttaaaggaagaaataaaaatcatgtactaagaaatatagagtattaaagtgaatggaaaa |
25732566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 25762859 - 25762957
Alignment:
| Q |
93 |
tttaggatgaacactgcatgctttaaaggaagaaataaaactcatggactaagaaatatagagtattaaagagaatggaaaagaaaatagaaataaaag |
191 |
Q |
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|||||||| | ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
25762859 |
tttaggatcaccactgcatgctttaaagaaagaaataaaaatcatggtctaagaaatatagatccttaacgagaatggaaaagaaaaaagaaataaaag |
25762957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25746215 - 25746280
Alignment:
| Q |
1 |
attatcttcaacagattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccat |
66 |
Q |
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||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
25746215 |
attattttcaaaacattcaaagttggtaaggaaaacaacagaagaatgtgaaactagttaatccat |
25746280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 25754958 - 25754994
Alignment:
| Q |
158 |
ttaaagagaatggaaaagaaaatagaaataaaagggt |
194 |
Q |
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|||||||||||||||||| ||| |||||||||||||| |
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| T |
25754958 |
ttaaagagaatggaaaagtaaaaagaaataaaagggt |
25754994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 25762774 - 25762814
Alignment:
| Q |
28 |
aaggaaaacaacagaagaatatgaaagtagtaaatccataa |
68 |
Q |
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|||||||||||||||| ||||||||| || ||||||||||| |
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| T |
25762774 |
aaggaaaacaacagaaaaatatgaaattaataaatccataa |
25762814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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