View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_1 (Length: 1360)

Name: NF1739_low_1
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_1
NF1739_low_1
[»] chr2 (22 HSPs)
chr2 (10-270)||(130317-130582)
chr2 (744-834)||(129745-129835)
chr2 (748-834)||(33201635-33201721)
chr2 (750-834)||(27591121-27591205)
chr2 (552-597)||(129985-130030)
chr2 (744-834)||(16568270-16568361)
chr2 (870-992)||(6354726-6354851)
chr2 (751-826)||(18175235-18175310)
chr2 (745-791)||(10886557-10886604)
chr2 (745-799)||(11538383-11538438)
chr2 (140-270)||(35114808-35114933)
chr2 (202-270)||(41366113-41366177)
chr2 (752-827)||(735730-735805)
chr2 (398-429)||(130153-130184)
chr2 (745-799)||(11549967-11550022)
chr2 (744-799)||(14690109-14690164)
chr2 (789-831)||(4552369-4552411)
chr2 (140-232)||(9732872-9732963)
chr2 (204-270)||(5278839-5278901)
chr2 (789-834)||(9045166-9045211)
chr2 (789-834)||(20111050-20111095)
chr2 (745-778)||(44104135-44104168)
[»] chr4 (25 HSPs)
chr4 (747-835)||(17942487-17942576)
chr4 (745-825)||(37441916-37441996)
chr4 (745-826)||(4815895-4815978)
chr4 (140-232)||(47361349-47361439)
chr4 (870-992)||(14244176-14244301)
chr4 (748-834)||(38004415-38004511)
chr4 (747-825)||(21393124-21393203)
chr4 (746-799)||(11075152-11075205)
chr4 (744-799)||(12291370-12291425)
chr4 (187-232)||(22318364-22318410)
chr4 (749-799)||(24636805-24636855)
chr4 (745-799)||(32204185-32204238)
chr4 (789-834)||(44277282-44277327)
chr4 (790-834)||(23951073-23951116)
chr4 (751-783)||(33144181-33144213)
chr4 (202-232)||(7001912-7001942)
chr4 (744-778)||(7456664-7456698)
chr4 (202-232)||(39078721-39078751)
chr4 (759-831)||(53354080-53354162)
chr4 (745-778)||(7712960-7712993)
chr4 (789-834)||(10306854-10306899)
chr4 (789-834)||(12294681-12294726)
chr4 (789-822)||(24916081-24916114)
chr4 (195-232)||(28115312-28115349)
chr4 (1301-1330)||(40492197-40492226)
[»] chr3 (18 HSPs)
chr3 (749-834)||(7137389-7137474)
chr3 (748-831)||(4862250-4862333)
chr3 (748-834)||(4857269-4857355)
chr3 (748-834)||(4846405-4846491)
chr3 (748-825)||(4849052-4849129)
chr3 (744-834)||(29541685-29541784)
chr3 (751-803)||(35258873-35258926)
chr3 (780-834)||(4879029-4879083)
chr3 (204-270)||(34026691-34026753)
chr3 (745-778)||(34804381-34804414)
chr3 (744-799)||(17583217-17583273)
chr3 (140-270)||(21373954-21374079)
chr3 (749-799)||(49428589-49428640)
chr3 (757-799)||(45651332-45651374)
chr3 (745-778)||(2699525-2699558)
chr3 (790-835)||(7982750-7982795)
chr3 (745-782)||(13867812-13867849)
chr3 (789-834)||(17035294-17035339)
[»] chr8 (18 HSPs)
chr8 (744-833)||(33300022-33300110)
chr8 (744-833)||(28622243-28622333)
chr8 (911-1020)||(2314961-2315074)
chr8 (744-834)||(19341859-19341950)
chr8 (744-834)||(31267620-31267719)
chr8 (745-834)||(15920071-15920169)
chr8 (747-834)||(32161947-32162039)
chr8 (897-992)||(1874807-1874902)
chr8 (202-270)||(15001489-15001553)
chr8 (744-802)||(35173354-35173412)
chr8 (745-802)||(3539309-3539367)
chr8 (749-834)||(11912039-11912124)
chr8 (789-834)||(11876389-11876434)
chr8 (789-834)||(11891396-11891441)
chr8 (204-270)||(13406955-13407017)
chr8 (744-778)||(29038017-29038051)
chr8 (749-778)||(2442257-2442286)
chr8 (789-830)||(9014899-9014940)
[»] chr6 (8 HSPs)
chr6 (744-834)||(2536524-2536615)
chr6 (140-232)||(18597139-18597230)
chr6 (746-799)||(22793690-22793744)
chr6 (748-799)||(4920800-4920852)
chr6 (744-787)||(23659248-23659292)
chr6 (744-778)||(11573675-11573709)
chr6 (791-832)||(11984349-11984390)
chr6 (195-232)||(14808036-14808073)
[»] chr7 (24 HSPs)
chr7 (744-834)||(29357116-29357206)
chr7 (745-834)||(13702233-13702330)
chr7 (744-798)||(38636344-38636399)
chr7 (744-799)||(40358482-40358538)
chr7 (789-835)||(13638371-13638417)
chr7 (745-783)||(13639891-13639929)
chr7 (745-778)||(678655-678688)
chr7 (789-834)||(13640989-13641034)
chr7 (789-834)||(13703370-13703415)
chr7 (785-829)||(29365837-29365881)
chr7 (744-795)||(35079608-35079660)
chr7 (745-781)||(38635964-38636000)
chr7 (744-794)||(14625117-14625168)
chr7 (745-791)||(40659458-40659505)
chr7 (789-831)||(13861411-13861453)
chr7 (744-778)||(43140536-43140570)
chr7 (745-778)||(7483422-7483455)
chr7 (793-834)||(7806826-7806867)
chr7 (789-834)||(13640688-13640733)
chr7 (789-834)||(13703069-13703114)
chr7 (789-834)||(24389914-24389959)
chr7 (789-834)||(35070901-35070946)
chr7 (789-834)||(35079560-35079605)
chr7 (793-834)||(38151535-38151576)
[»] chr5 (19 HSPs)
chr5 (744-834)||(39585055-39585144)
chr5 (744-836)||(39178090-39178192)
chr5 (744-834)||(27175177-27175277)
chr5 (744-831)||(9666168-9666265)
chr5 (744-799)||(9051021-9051077)
chr5 (744-799)||(11487527-11487582)
chr5 (745-799)||(17822185-17822240)
chr5 (789-832)||(34450008-34450051)
chr5 (746-831)||(1585720-1585805)
chr5 (744-786)||(7734200-7734242)
chr5 (771-827)||(1134311-1134367)
chr5 (745-799)||(13998627-13998682)
chr5 (744-794)||(17704314-17704365)
chr5 (745-799)||(42522723-42522778)
chr5 (195-232)||(5571646-5571683)
chr5 (204-270)||(22432320-22432382)
chr5 (789-834)||(26647302-26647347)
chr5 (789-834)||(26918886-26918931)
chr5 (789-834)||(42422626-42422671)
[»] chr1 (16 HSPs)
chr1 (744-831)||(3086057-3086145)
chr1 (744-834)||(29689015-29689105)
chr1 (745-801)||(14487084-14487141)
chr1 (746-799)||(11067097-11067151)
chr1 (745-799)||(4968704-4968759)
chr1 (140-270)||(6711063-6711188)
chr1 (789-834)||(16095813-16095857)
chr1 (789-834)||(43020808-43020853)
chr1 (202-270)||(13994153-13994217)
chr1 (791-834)||(15716915-15716958)
chr1 (211-270)||(2761643-2761698)
chr1 (202-232)||(6029379-6029409)
chr1 (140-232)||(32289361-32289452)
chr1 (140-232)||(51264561-51264652)
chr1 (793-834)||(4653761-4653802)
chr1 (793-834)||(47401445-47401486)
[»] scaffold0025 (1 HSPs)
scaffold0025 (744-834)||(11677-11776)
[»] scaffold0650 (1 HSPs)
scaffold0650 (140-232)||(1591-1682)
[»] scaffold1017 (1 HSPs)
scaffold1017 (744-799)||(2048-2104)
[»] scaffold0013 (1 HSPs)
scaffold0013 (745-826)||(97023-97112)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 3e-79; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 130582 - 130317
Alignment:
Q  10 acatcatcatactcgtgtaaccgcaacatgccaaaaacata--ataaacggtttaacttgtaaaaaatttgggtgc-tttgatttgataaaaaacaagg- 105  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||     
T  130582 acatcatcgtactcgtgtaaccgcaacatgccaaaaacatataataaacggtttaacttgtaaagaatttgggtgcctttgatttgataaaaaataagga 130483  T
Q  106 gatgacataagaagttcagttcttcggtatttgatgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaaat 205  Q
    |||||||||||||||||||  |||| | ||||||| |||||||| |||| |||||| ||| ||||||||  ||||||||||||||  |||||| ||||||    
T  130482 gatgacataagaagttcagcacttcagaatttgataatttgtaatactgcttcaaaaacatgacacaaactagaggttagggacagaacaaaacttaaat 130383  T
Q  206 ttttgtccctcaccaaaccacaacacatttaata-ttttgtctcacgtacaaattatctaaaatac 270  Q
    ||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||    
T  130382 ttttgtccctcaccaaaccacaacacaattaatatttttatcttacgtacaaattatctaaaatac 130317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 129835 - 129745
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  129835 ctataataatgttatattcttagtgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 129745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 748 - 834
Target Start/End: Original strand, 33201635 - 33201721
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||| |||||||| ||||| |||||||||||    
T  33201635 aataatgttatattgttggtgttattaaaaagataagaatttttgttatattgtttttgtcattgaaaaagataactatggtttgtt 33201721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 750 - 834
Target Start/End: Original strand, 27591121 - 27591205
Alignment:
Q  750 taatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||| ||||||| ||||||||| ||  ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  27591121 taatgttatattgttggtgttattgaaaagataaaaatatttgttatattattgttgtcattgaaaaagataaatatgatttgtt 27591205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 130030 - 129985
Alignment:
Q  552 gtcaatcataacgaacctctcaaaaaataattatcaatccttaacg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  130030 gtcaatcataacgaacctctcaaaaaataattatcaatccttaacg 129985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 16568270 - 16568361
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaag-ataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||| |||||||||||||||||||||||||||||  ||||    |||||||||||||||||||| ||||||||  ||||||| ||||||||    
T  16568270 ctatactaatgttatattgttgatgttattaaaaaatataaatttttttgttatattattgttgtcattgaaaaatataaatacggtttgtt 16568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 870 - 992
Target Start/End: Original strand, 6354726 - 6354851
Alignment:
Q  870 gaattgcaagacgcaaaacactcgcgggaac--caaataaa-agatacaaatggcgtcgtaaatatacgggacaccaacaaccctaacacccaaagctaa 966  Q
    ||||||||||||||||||||||| ||| ||   |||| ||| |||||||||||||| || |||||||||| ||||||||||||| | | |||||| | |     
T  6354726 gaattgcaagacgcaaaacactcacggaaaaaacaaagaaacagatacaaatggcgccgcaaatatacggaacaccaacaacccaagctcccaaaacgat 6354825  T
Q  967 gccaaataatgagaccgaagtatacc 992  Q
     | |||||||||| ||||||||||||    
T  6354826 tctaaataatgaggccgaagtatacc 6354851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 751 - 826
Target Start/End: Complemental strand, 18175310 - 18175235
Alignment:
Q  751 aatgttatattgttgatgttattaaaaa-gataagaaattttgttatattattgttgttattgaaaatgataaatat 826  Q
    ||||||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||  |||||||| ||||||||    
T  18175310 aatgttatattcttggtgttattaaaaaagataagaatttttgttatattcttgttgtcgttgaaaat-ataaatat 18175235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 10886557 - 10886604
Alignment:
Q  745 tataataatgttatattgttgatgttatt-aaaaagataagaaatttt 791  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10886557 tataataatgttatattgttgatgttattaaaaaagataagaattttt 10886604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 799
Target Start/End: Original strand, 11538383 - 11538438
Alignment:
Q  745 tataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  11538383 tataataatgtcatattgttggtgttattaaaaaagataagaatttttgttatatt 11538438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 35114933 - 35114808
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacacatttaat 238  Q
    ||||||||||||||||||||   ||||||||  ||  |||||  ||||||| |||||||  | | ||||||||||||||||||||||||||||    |||    
T  35114933 tgatttgtaaaactgtttcaggtacaggaca--aactagaggcaagggacaggacaaaaactcatatttttgtccctcaccaaaccacaacac----aat 35114840  T
Q  239 attttgtctcacgtacaaattatctaaaatac 270  Q
     ||||||| ||||||||| || ||||||||||    
T  35114839 tttttgtcccacgtacaagttgtctaaaatac 35114808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 41366113 - 41366177
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||||| ||||| || ||||||||||    
T  41366113 aaatttttgtccctcaccaaaccacaacac----aattttttgtctcacatacaagttgtctaaaatac 41366177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 752 - 827
Target Start/End: Complemental strand, 735805 - 735730
Alignment:
Q  752 atgttatattgttgatgttattaaaaag-ataagaaattttgttatattattgttgttattgaaaatgataaatatg 827  Q
    |||||||||||||||| | ||||||||  ||||||| |||| ||||||||||||| | |||||||| ||||||||||    
T  735805 atgttatattgttgatatcattaaaaaatataagaattttt-ttatattattgttatcattgaaaaagataaatatg 735730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 398 - 429
Target Start/End: Complemental strand, 130184 - 130153
Alignment:
Q  398 caaaccaaacaaacattcaatacttctccact 429  Q
    ||||||||||||||||||||||||||||||||    
T  130184 caaaccaaacaaacattcaatacttctccact 130153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 745 - 799
Target Start/End: Original strand, 11549967 - 11550022
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaa-agataagaaattttgttatatt 799  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||  |||||||||||    
T  11549967 tataataatgtcatattgttgttgttattaaaagagataagaatctttgttatatt 11550022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 744 - 799
Target Start/End: Complemental strand, 14690164 - 14690109
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||||||| |||||||||||| | ||||  |||| |||||||    
T  14690164 ctataataatgttatattgttggtgttattaaaaaaaaaagattttttattatatt 14690109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 831
Target Start/End: Original strand, 4552369 - 4552411
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggttt 831  Q
    ||||||||||||||||||| ||||||||  |||||||||||||    
T  4552369 tttgttatattattgttgtcattgaaaaatataaatatggttt 4552411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 9732872 - 9732963
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||   ||||||||  ||   ||||  |||||||||||||||  | | |||||||||||||||||||||||||||||    
T  9732872 tgatttgtaaaactgtttcaggtacaggaca--aactggaggcaagggacaagacaaaaactcatatttttgtccctcaccaaaccacaacaca 9732963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 5278839 - 5278901
Alignment:
Q  204 atttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    |||||||||||||||||||||||| |||    ||| ||||||| ||||||||| || ||||||||||    
T  5278839 atttttgtccctcaccaaaccacagcac----aattttttgtcccacgtacaagttgtctaaaatac 5278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 9045211 - 9045166
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  9045211 tttgttatattattgctgtcattgaaaaatataaatatggtttgtt 9045166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 20111050 - 20111095
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||| |||  ||||||||||||||||    
T  20111050 tttgttatattattgttgtcattggaaaatataaatatggtttgtt 20111095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 745 - 778
Target Start/End: Complemental strand, 44104168 - 44104135
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    ||||||||||||||||||||| ||||||||||||    
T  44104168 tataataatgttatattgttggtgttattaaaaa 44104135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 4e-26; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 747 - 835
Target Start/End: Original strand, 17942487 - 17942576
Alignment:
Q  747 taataatgttatattgttgatgttatt-aaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgttt 835  Q
    ||||||||||| ||||||| ||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17942487 taataatgttaaattgttgttgttattgaaaaagataataatttttgttatattattgttgttattgaaaaagataaatatggtttgttt 17942576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 745 - 825
Target Start/End: Original strand, 37441916 - 37441996
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaata 825  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  37441916 tataataatgttatattgttgttgttattaaaaagataagaatttttgttacattattgttgtcattgaaaaagataaata 37441996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 745 - 826
Target Start/End: Original strand, 4815895 - 4815978
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa-gat-aagaaattttgttatattattgttgttattgaaaatgataaatat 826  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  4815895 tataataatgttatattgttggtgttattaaaaaagattaagaatttttgttatattattgttgtcattgaaaaagataaatat 4815978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 47361349 - 47361439
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaaatttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||   ||||||||  || | ||||  ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  47361349 tgatttgtaaaactgtttcaggtacaggaca--aaccggaggcaagggacaagacaaaattcatatttttgtccctcaccaaaccacaacaca 47361439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 870 - 992
Target Start/End: Original strand, 14244176 - 14244301
Alignment:
Q  870 gaattgcaagacgcaaaacactcgcgggaac--caaataaa-agatacaaatggcgtcgtaaatatacgggacaccaacaaccctaacacccaaagctaa 966  Q
    ||||||||||||||||||||||| ||| ||   |||| ||| |||||||||||||| || |||||||||| ||||||||||||| | | |||||| | |     
T  14244176 gaattgcaagacgcaaaacactcacggaaaaaacaaagaaacagatacaaatggcgccgcaaatatacggaacaccaacaacccaagctcccaaaacgat 14244275  T
Q  967 gccaaataatgagaccgaagtatacc 992  Q
     | |||||||||| ||||||||||||    
T  14244276 tctaaataatgaggccgaagtatacc 14244301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 748 - 834
Target Start/End: Original strand, 38004415 - 38004511
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaa-gataagaaattttgtta---------tattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||||         |||||||||||| |||||||| |||||||||||||||||    
T  38004415 aataatgttatattgttgttgttattaaaaaagataagaatttttgttaaatttattatattattgttgtcattgaaaaagataaatatggtttgtt 38004511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 747 - 825
Target Start/End: Complemental strand, 21393203 - 21393124
Alignment:
Q  747 taataatgttatattgttgatgttattaaaaa-gataagaaattttgttatattattgttgttattgaaaatgataaata 825  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||||||||||| ||| |||| ||||||||  |||||||    
T  21393203 taataatgttatattgttgcttttattaaaaaagataagaatttttgttatataattattgtcattgaaaaatataaata 21393124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 746 - 799
Target Start/End: Complemental strand, 11075205 - 11075152
Alignment:
Q  746 ataataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    ||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  11075205 ataataatgttatatcgttggtgttattaaaaaaataagaatttttgttatatt 11075152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 744 - 799
Target Start/End: Complemental strand, 12291425 - 12291370
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    |||||||||| ||||||| ||| ||||||||| |||||||||| ||||||||||||    
T  12291425 ctataataatattatattcttgttgttattaataagataagaatttttgttatatt 12291370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 22318364 - 22318410
Alignment:
Q  187 gacaagacaaaattt-aaatttttgtccctcaccaaaccacaacaca 232  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||    
T  22318364 gacaggacaaaatttgaaatttttgtccctcaccaaaccacaacaca 22318410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 749 - 799
Target Start/End: Original strand, 24636805 - 24636855
Alignment:
Q  749 ataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    |||||||||| || ||||||||||||||||||||| || ||||||||||||    
T  24636805 ataatgttatgttattgatgttattaaaaagataaaaatttttgttatatt 24636855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 745 - 799
Target Start/End: Complemental strand, 32204238 - 32204185
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    ||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||    
T  32204238 tataataatgttatattgttggtattattaaaaa-ataagaatttttgttatatt 32204185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 44277327 - 44277282
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  44277327 tttgttatattattgttgtcattgaaaaatataaatatggtttgtt 44277282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 790 - 834
Target Start/End: Complemental strand, 23951116 - 23951073
Alignment:
Q  790 ttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  23951116 ttgttatattattgttgttattgaaaa-gataaatatgatttgtt 23951073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 751 - 783
Target Start/End: Complemental strand, 33144213 - 33144181
Alignment:
Q  751 aatgttatattgttgatgttattaaaaagataa 783  Q
    |||||||||||||||||||||||||||||||||    
T  33144213 aatgttatattgttgatgttattaaaaagataa 33144181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 7001942 - 7001912
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||||||||||||||||||||||||||||    
T  7001942 aaatttttgtccctcaccaaaccacaacaca 7001912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 744 - 778
Target Start/End: Complemental strand, 7456698 - 7456664
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||||||||||||||||||| ||||||||    
T  7456698 ctataataatgttatattgttgatgtcattaaaaa 7456664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 39078751 - 39078721
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||||||||||||||||||||||||||||    
T  39078751 aaatttttgtccctcaccaaaccacaacaca 39078721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 759 - 831
Target Start/End: Complemental strand, 53354162 - 53354080
Alignment:
Q  759 attgttgatgttattaaaaa-gataagaaattttgttatatt---------attgttgttattgaaaatgataaatatggttt 831  Q
    |||||||||||||||||||| |||||||| ||||||||||||         |||||||| |||||||| ||||||||||||||    
T  53354162 attgttgatgttattaaaaaagataagaatttttgttatatttgttatataattgttgtcattgaaaaagataaatatggttt 53354080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 7712960 - 7712993
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||| |||||||||||||||||||||||    
T  7712960 tataataatgctatattgttgatgttattaaaaa 7712993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 10306854 - 10306899
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||    
T  10306854 tttgttatattattgttgtcatggaaaaaaataaatatggtttgtt 10306899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 12294681 - 12294726
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||| | ||||||||  ||||||||||||||||    
T  12294681 tttgttatattattgttctcattgaaaaatataaatatggtttgtt 12294726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 822
Target Start/End: Original strand, 24916081 - 24916114
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataa 822  Q
    |||||||||||||||||||||||||||| |||||    
T  24916081 tttgttatattattgttgttattgaaaaagataa 24916114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 28115349 - 28115312
Alignment:
Q  195 aaaatttaaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28115349 aaaattgatatttttgtccctcaccaaaccacaacaca 28115312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1301 - 1330
Target Start/End: Original strand, 40492197 - 40492226
Alignment:
Q  1301 gaggattccaacaccattcataaaatagac 1330  Q
    ||||||||||||||||||||||||||||||    
T  40492197 gaggattccaacaccattcataaaatagac 40492226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 4e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 749 - 834
Target Start/End: Complemental strand, 7137474 - 7137389
Alignment:
Q  749 ataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||    
T  7137474 ataatgttatattgttggtgttattagaaagataagaacttttgttatattattgttgtcattaaaaaagataaatatggtttgtt 7137389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 748 - 831
Target Start/End: Original strand, 4862250 - 4862333
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggttt 831  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||    
T  4862250 aataatattatattgttggtgttattaaaaagataagaatttttgttatattattgttgtcattgagaaagataaatatggttt 4862333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 748 - 834
Target Start/End: Original strand, 4857269 - 4857355
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||| |||| |||| ||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  4857269 aataatgtgatatggttggtgttaataaaaagataagaatttttgttatattattgttgtcattgagaatcataaatattgtttgtt 4857355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 748 - 834
Target Start/End: Original strand, 4846405 - 4846491
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||| ||||||||| | | |||||||| ||||||| |||||||||||||||||||| |||||  | |||||||||||||||||    
T  4846405 aataatgtaatattgttggtataattaaaaaaataagaatttttgttatattattgttgtcattgagtaagataaatatggtttgtt 4846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 748 - 825
Target Start/End: Original strand, 4849052 - 4849129
Alignment:
Q  748 aataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaata 825  Q
    |||||||| ||||||||| ||| |||||||| ||||||| |||||||||||||||||||| ||||| || ||||||||    
T  4849052 aataatgtaatattgttggtgtaattaaaaaaataagaatttttgttatattattgttgtcattgagaaagataaata 4849129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 29541784 - 29541685
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaat---------tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||| |||||| || ||||||||||||||||||||| |         ||||||||||||||||||| |||||| | |||||||||||||||||    
T  29541784 ctataataatgctatattatttatgttattaaaaagataagaatttttgttatgtttgttatattattgttgtcattgaataagataaatatggtttgtt 29541685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 751 - 803
Target Start/End: Complemental strand, 35258926 - 35258873
Alignment:
Q  751 aatgttatattgttgatgttatt-aaaaagataagaaattttgttatattattg 803  Q
    ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  35258926 aatgttatattgttgatgttattgaaaaagataagaatttttattatattattg 35258873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 780 - 834
Target Start/End: Original strand, 4879029 - 4879083
Alignment:
Q  780 ataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  4879029 ataagaatttttgttatattattgttgtcattgagaatcataaatattgtttgtt 4879083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 34026753 - 34026691
Alignment:
Q  204 atttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    ||||||||||||||||||||||||||||    ||| ||||||| ||||||||| || ||||||||||    
T  34026753 atttttgtccctcaccaaaccacaacac----aattttttgtcccacgtacaagttgtctaaaatac 34026691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 34804381 - 34804414
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    ||||||||||||||||||||||||||||||||||    
T  34804381 tataataatgttatattgttgatgttattaaaaa 34804414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 744 - 799
Target Start/End: Original strand, 17583217 - 17583273
Alignment:
Q  744 ctataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||| |||| |||||||    
T  17583217 ctatagtaatgttatattgttggtgttattaaaaaagataagaatttttattatatt 17583273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 21374079 - 21373954
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacacatttaat 238  Q
    ||||||||||||||||||||   |||||||| |  |  ||||  ||||||| |||||||| | | ||||||||||||||||||||||||||||    ||     
T  21374079 tgatttgtaaaactgtttcaggtacaggacaaactt--gaggcaagggacaggacaaaatctcatatttttgtccctcaccaaaccacaacac----aac 21373986  T
Q  239 attttgtctcacgtacaaattatctaaaatac 270  Q
     ||||||| ||||||||| || ||||||||||    
T  21373985 tttttgtcccacgtacaagttgtctaaaatac 21373954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 749 - 799
Target Start/End: Original strand, 49428589 - 49428640
Alignment:
Q  749 ataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||| |||||||    
T  49428589 ataatgttatattgttgctgttattaaaaaagataagaatttttcttatatt 49428640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 757 - 799
Target Start/End: Complemental strand, 45651374 - 45651332
Alignment:
Q  757 atattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  45651374 atattgttagtgttattaaaaagataagaatttttgttatatt 45651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 745 - 778
Target Start/End: Complemental strand, 2699558 - 2699525
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    ||||||||||||||||||||| ||||||||||||    
T  2699558 tataataatgttatattgttggtgttattaaaaa 2699525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 790 - 835
Target Start/End: Complemental strand, 7982795 - 7982750
Alignment:
Q  790 ttgttatattattgttgttattgaaaatgataaatatggtttgttt 835  Q
    |||| ||||||||||||| ||||||||  |||||||||||||||||    
T  7982795 ttgtgatattattgttgtcattgaaaaatataaatatggtttgttt 7982750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 745 - 782
Target Start/End: Complemental strand, 13867849 - 13867812
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagata 782  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  13867849 tataataatcttatattgttggtgttattaaaaagata 13867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 17035294 - 17035339
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||| |||||||| ||||||||  ||||||||||||||||    
T  17035294 tttgttatatcattgttgtcattgaaaaatataaatatggtttgtt 17035339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 744 - 833
Target Start/End: Complemental strand, 33300110 - 33300022
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgt 833  Q
    |||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||    
T  33300110 ctataataatattatattgttggtgtaattaaaaagataagaatttttgttatattattgttgtcattgaaaa-aataaatatggtttgt 33300022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 744 - 833
Target Start/End: Complemental strand, 28622333 - 28622243
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgt 833  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||| ||||||    
T  28622333 ctataataatgttatattgttatagttattaaaaaagataagaaattttgttatattattgttgtcattgaaaaatataaatatagtttgt 28622243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 911 - 1020
Target Start/End: Original strand, 2314961 - 2315074
Alignment:
Q  911 atacaaatggcgtcgtaaatatacgggacaccaacaaccctaacacccaaagctaagccaaataatgagaccgaagtatacctccaga----tataacac 1006  Q
    ||||||||||||  ||||||| ||||||||||||||| || |||||||||| | || | ||||||||||||||||||||||| || ||    || |||||    
T  2314961 atacaaatggcgctgtaaatacacgggacaccaacaatccaaacacccaaaacaaaacaaaataatgagaccgaagtataccaccggaacattaaaacac 2315060  T
Q  1007 cggaagcataccct 1020  Q
    ||||||||||||||    
T  2315061 cggaagcataccct 2315074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 19341859 - 19341950
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaag-ataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| |||| ||||||||||||||| |||||||| |||||| ||| ||||||    
T  19341859 ctataataatgttatattgttggcgttattaaaaaatataagaatttttattatattattgttgtcattgaaaaagataaacatgatttgtt 19341950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 31267719 - 31267620
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaat---------tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||| |||||||| |||||| ||||||||||||| |         |||||||||||||||||||||||||||| |||||||| ||||||||    
T  31267719 ctataataatgttgtattgttgttgttatcaaaaagataagaattattgttatgtttgttatattattgttgttattgaaaaagataaatacggtttgtt 31267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 745 - 834
Target Start/End: Original strand, 15920071 - 15920169
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataagaaatttt---------gttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||         |||||||||||||||| |||  ||| |||||||||||||||||    
T  15920071 tataataatgttatattgttggtgttattaaaaagataagaatttttattatatttgttatattattgttgtaatttgaaaagataaatatggtttgtt 15920169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 747 - 834
Target Start/End: Original strand, 32161947 - 32162039
Alignment:
Q  747 taataatgttatattgttgatgttattaaaaagat-----aagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||||||||||||||     || ||||| |  |||||||||||||| ||||||||  |||||||| |||||||    
T  32161947 taataatgttatattgttgttgttattaaaaagatttaaaaaaaaattgttatatattattgttgtcattgaaaaatataaatatagtttgtt 32162039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 897 - 992
Target Start/End: Complemental strand, 1874902 - 1874807
Alignment:
Q  897 gaaccaaataaaagatacaaatggcgtcgtaaatatacgggacaccaacaaccctaacacccaaagctaagccaaataatgagaccgaagtatacc 992  Q
    |||| ||| ||||||||||||||||| || |||||||||| ||||||||| ||| | | |||||| | |  | |||||||||| ||||||||||||    
T  1874902 gaactaaagaaaagatacaaatggcgccgcaaatatacggaacaccaacagcccaagctcccaaaacgattctaaataatgaggccgaagtatacc 1874807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 15001553 - 15001489
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    ||||||||||||||||||||||||||||||    ||  ||||||| ||||||||| |||||||||||||    
T  15001553 aaatttttgtccctcaccaaaccacaacac----aactttttgtcccacgtacaagttatctaaaatac 15001489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 744 - 802
Target Start/End: Complemental strand, 35173412 - 35173354
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaa-agataagaaattttgttatattatt 802  Q
    |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  35173412 ctataagaatgttatattgttgatgttattaaaatagataag-aactttgttatattatt 35173354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 745 - 802
Target Start/End: Original strand, 3539309 - 3539367
Alignment:
Q  745 tataataatgttatattgttgatgttattaa-aaagataagaaattttgttatattatt 802  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| |||| ||||||||||    
T  3539309 tataataacgttatattgttgaggttattaataaagataagaattttttttatattatt 3539367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 749 - 834
Target Start/End: Original strand, 11912039 - 11912124
Alignment:
Q  749 ataatgttatattgttgatgttatt-aaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||| ||||||||||||||||||| ||||||||||||| || | ||| ||| ||| |||||||||||| |||| ||||| ||||||    
T  11912039 ataatattatattgttgatgttattaaaaaagataagaatttatattacatt-ttggtgttattgaaaaagatacatatgatttgtt 11912124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 11876434 - 11876389
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  11876434 tttgttatattattgttgtcattgaaaaagataaatatgatttgtt 11876389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 11891441 - 11891396
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  11891441 tttgttatattattgttgtcattgaaaaagataaatatgatttgtt 11891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 13406955 - 13407017
Alignment:
Q  204 atttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    |||||||||||||||||||||||| ||    |||| ||||||||||||||||| || ||||||||||    
T  13406955 atttttgtccctcaccaaaccacagca----taattttttgtctcacgtacaagttgtctaaaatac 13407017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 744 - 778
Target Start/End: Complemental strand, 29038051 - 29038017
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||||||||||||||| ||||||||||||    
T  29038051 ctataataatgttatattgttggtgttattaaaaa 29038017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 749 - 778
Target Start/End: Original strand, 2442257 - 2442286
Alignment:
Q  749 ataatgttatattgttgatgttattaaaaa 778  Q
    ||||||||||||||||||||||||||||||    
T  2442257 ataatgttatattgttgatgttattaaaaa 2442286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 830
Target Start/End: Complemental strand, 9014940 - 9014899
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtt 830  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  9014940 tttgttatattattgttgtcattgaaaaagataactatggtt 9014899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 2536615 - 2536524
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||| ||||||||||| |||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||| |||||||    
T  2536615 ctataataatattatattgttgttgttattaaaaaagataagaatttttgttacattattgttgtcattgaaaaagataaatattgtttgtt 2536524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 18597139 - 18597230
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaattt-aaatttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||  || | ||||  || | ||||  ||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  18597139 tgatttgtaaaactgtttcagggatatgaca--aaccggaggcaagggacatgacaaaatctgaaatttttgtccctcaccaaaccacaacaca 18597230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 746 - 799
Target Start/End: Complemental strand, 22793744 - 22793690
Alignment:
Q  746 ataataatgttatattgttgatgtta-ttaaaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||    
T  22793744 ataataatgttatattgttggtgttatttaaaaagataagaatttttattatatt 22793690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 748 - 799
Target Start/End: Original strand, 4920800 - 4920852
Alignment:
Q  748 aataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  4920800 aataatgttatattgttggtgttattaaaaaagataagaatatttgttatatt 4920852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 744 - 787
Target Start/End: Original strand, 23659248 - 23659292
Alignment:
Q  744 ctataataatgttatattgttgatgttatta-aaaagataagaaa 787  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  23659248 ctataataatgttatattgttggtgttattataaaagataagaaa 23659292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 744 - 778
Target Start/End: Original strand, 11573675 - 11573709
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||||||||||||||| ||||||||||||    
T  11573675 ctataataatgttatattgttggtgttattaaaaa 11573709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 791 - 832
Target Start/End: Original strand, 11984349 - 11984390
Alignment:
Q  791 tgttatattattgttgttattgaaaatgataaatatggtttg 832  Q
    ||||||||||||||||||||| |||| ||||||||| |||||    
T  11984349 tgttatattattgttgttattaaaaaagataaatatagtttg 11984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 14808036 - 14808073
Alignment:
Q  195 aaaatttaaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||| | |||||||||||||||||||||||||||||    
T  14808036 aaaattgatatttttgtccctcaccaaaccacaacaca 14808073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 6e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 29357206 - 29357116
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||||||| |||||||||||||||||    |||||||||||||||||||| | |||||| ||||| |||||||||||    
T  29357206 ctataataatgttatattgttggtgttattaaaaagataaatttttttgttatattattgttgtcactgaaaaagataagtatggtttgtt 29357116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 745 - 834
Target Start/End: Complemental strand, 13702330 - 13702233
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataa-------gaaat-tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||||| |||||||||||||||||       ||||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  13702330 tataataatgttatattgttggtgttattaaaaagataataattttgaaatatttgttatattatagttgtcattgaaaaaaataaatatggtttgtt 13702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 744 - 798
Target Start/End: Complemental strand, 38636399 - 38636344
Alignment:
Q  744 ctataataatgttatattgttgatgttattaa-aaagataagaaattttgttatat 798  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  38636399 ctataataatgttatattgtttatgttattaagaaagataagaatttttgttatat 38636344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 744 - 799
Target Start/End: Original strand, 40358482 - 40358538
Alignment:
Q  744 ctataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  40358482 ctataacaatgttatattgttgatgttattaaaaaagataagaatttttgtcatatt 40358538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 789 - 835
Target Start/End: Complemental strand, 13638417 - 13638371
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgttt 835  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  13638417 tttgttatattatagttgtcattgaaaaagataaatatggtttgttt 13638371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 745 - 783
Target Start/End: Complemental strand, 13639929 - 13639891
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataa 783  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13639929 tataataatgttatattgttggtgttattaaaaagataa 13639891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 745 - 778
Target Start/End: Original strand, 678655 - 678688
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    ||||||||||||||||||||||||||||||||||    
T  678655 tataataatgttatattgttgatgttattaaaaa 678688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 13640989 - 13641034
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  13640989 tttgttatattattgttgtcattgaaaaagatagatatggtttgtt 13641034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 13703370 - 13703415
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  13703370 tttgttatattattgttgtcattgaaaaagataaatatgatttgtt 13703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 785 - 829
Target Start/End: Complemental strand, 29365881 - 29365837
Alignment:
Q  785 aaattttgttatattattgttgttattgaaaatgataaatatggt 829  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||    
T  29365881 aaatttttttatattattgttgtcattgaaaaagataaatatggt 29365837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 744 - 795
Target Start/End: Complemental strand, 35079660 - 35079608
Alignment:
Q  744 ctataataatgttatattgttgatgttatt-aaaaagataagaaattttgtta 795  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||    
T  35079660 ctataataatgttatattgttgttgtaattaaaaaagataagaatttttgtta 35079608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 745 - 781
Target Start/End: Complemental strand, 38636000 - 38635964
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagat 781  Q
    ||||||||||||||||||||| |||||||||||||||    
T  38636000 tataataatgttatattgttggtgttattaaaaagat 38635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 744 - 794
Target Start/End: Complemental strand, 14625168 - 14625117
Alignment:
Q  744 ctataataatgttatattgttgatgttatta-aaaagataagaaattttgtt 794  Q
    |||||| ||||||||||| |||||||||||| |||||||||||| |||||||    
T  14625168 ctataacaatgttatattattgatgttattaaaaaagataagaatttttgtt 14625117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 745 - 791
Target Start/End: Complemental strand, 40659505 - 40659458
Alignment:
Q  745 tataataatgttatattgttgatgttatta-aaaagataagaaatttt 791  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  40659505 tataataatgttatattgttggtgttattaaaaaagataagaattttt 40659458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 831
Target Start/End: Complemental strand, 13861453 - 13861411
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggttt 831  Q
    ||||||| |||||||||||||||||||| |||||| |||||||    
T  13861453 tttgttaaattattgttgttattgaaaaagataaacatggttt 13861411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 744 - 778
Target Start/End: Original strand, 43140536 - 43140570
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||||||||||||||| ||||||||||||    
T  43140536 ctataataatgttatattgttggtgttattaaaaa 43140570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 745 - 778
Target Start/End: Complemental strand, 7483455 - 7483422
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa 778  Q
    |||||||||||||||||||||| |||||||||||    
T  7483455 tataataatgttatattgttgacgttattaaaaa 7483422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 793 - 834
Target Start/End: Original strand, 7806826 - 7806867
Alignment:
Q  793 ttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  7806826 ttatatcattgttgtcattgaaaaagataaatatggtttgtt 7806867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 13640688 - 13640733
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||| |||||||||||||||| ||| |||||| ||||||||||    
T  13640688 tttgttaaattattgttgttattgtaaaagataaacatggtttgtt 13640733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 13703069 - 13703114
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  13703069 tttgttaaattattgttgtcattgtaaaagataaatatggtttgtt 13703114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 24389914 - 24389959
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||||||||||| | |||| ||||| ||||||    
T  24389914 tttgttatattattgttgttattgaacaagatagatatgatttgtt 24389959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 35070946 - 35070901
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||||  ||||||  |||||||||||||||||    
T  35070946 tttgttatattattgttgtcgttgaaatagataaatatggtttgtt 35070901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 35079605 - 35079560
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||||  ||||||| ||||||||| |||||||    
T  35079605 tttgttatattattgttgtcgttgaaaaagataaatatagtttgtt 35079560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 793 - 834
Target Start/End: Original strand, 38151535 - 38151576
Alignment:
Q  793 ttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  38151535 ttatattattgttgttattgaaaaatataaatatagtttgtt 38151576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 39585055 - 39585144
Alignment:
Q  744 ctataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||||| || ||||||| |||||||| |||| ||||||||| |||||||||| ||||||||  | ||||||||||||||    
T  39585055 ctataataatgttatattgatggtgttattaaaaaagatgagaatttttgttatgttattgttgtcattgaaaa--aaaaatatggtttgtt 39585144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 744 - 836
Target Start/End: Complemental strand, 39178192 - 39178090
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaa-agataagaaat---------tttgttatattattgttgttattgaaaatgataaatatggtttgt 833  Q
    |||||||||||||||||||||||||||||||||| |||||| || |         |||||||||||| |||||| |||||||| ||||||||||||||||    
T  39178192 ctataataatgttatattgttgatgttattaaaatagataataatttttgttatatttgttatattactgttgtcattgaaaaagataaatatggtttgt 39178093  T
Q  834 ttg 836  Q
    |||    
T  39178092 ttg 39178090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 27175177 - 27175277
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttg---------ttatattattgttgttattgaaaatgataaatatggtttgt 833  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||         |||||||||| |||| |||||||| ||||||||||||||||    
T  27175177 ctataataatgttatattgttggtgttattaaaaaagataagaatttttgttatatttgttatattattattgtcattgaaaaagataaatatggtttgt 27175276  T
Q  834 t 834  Q
    |    
T  27175277 t 27175277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 744 - 831
Target Start/End: Original strand, 9666168 - 9666265
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttg---------ttatattattgttgttattgaaaatgataaatatggttt 831  Q
    |||||||||||||||||||||| ||| |||||||| |||||||| |||||         ||||||||||||||| |||||||| ||||||||||||||    
T  9666168 ctataataatgttatattgttgttgtaattaaaaaagataagaatttttgttacatttgttatattattgttgtcattgaaaaagataaatatggttt 9666265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 744 - 799
Target Start/End: Original strand, 9051021 - 9051077
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaa-agataagaaattttgttatatt 799  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||    
T  9051021 ctataataatattatattgctgatgttattaaaatagataagaatttttgttatatt 9051077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 744 - 799
Target Start/End: Complemental strand, 11487582 - 11487527
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||| |||  ||||||||||||||||||| |||| |||||||    
T  11487582 ctataataatgttatattattggcgttattaaaaagataagaatttttattatatt 11487527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 799
Target Start/End: Complemental strand, 17822240 - 17822185
Alignment:
Q  745 tataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatatt 799  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  17822240 tataataatattatattgttggtgttattgaaaaagataagaatttttgttatatt 17822185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 789 - 832
Target Start/End: Complemental strand, 34450051 - 34450008
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttg 832  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  34450051 tttgttatattattgttgtcattgaaaaagataaatatggtttg 34450008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 746 - 831
Target Start/End: Original strand, 1585720 - 1585805
Alignment:
Q  746 ataataatgttatattgttgatgttatt-aaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatggttt 831  Q
    |||||||| ||||||||||||| || || |||||||||| |||  |||||||||||||||||   |||||||| |||||||||||||    
T  1585720 ataataatattatattgttgattttgttaaaaaagataaaaaaaattgttatattattgttggctttgaaaat-ataaatatggttt 1585805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 744 - 786
Target Start/End: Complemental strand, 7734242 - 7734200
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataagaa 786  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  7734242 ctataataatgttttattgttggtgttattaaaaagataagaa 7734200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 771 - 827
Target Start/End: Original strand, 1134311 - 1134367
Alignment:
Q  771 attaaaaagataagaaattttgttatattattgttgttattgaaaatgataaatatg 827  Q
    ||||||||||||||||  ||| ||||||||||||||| ||||||||  |||||||||    
T  1134311 attaaaaagataagaatatttattatattattgttgtcattgaaaaatataaatatg 1134367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 745 - 799
Target Start/End: Complemental strand, 13998682 - 13998627
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaa-agataagaaattttgttatatt 799  Q
    ||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||    
T  13998682 tataatagtgttatattgttggtgttattaaaatagataataatttttgttatatt 13998627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 744 - 794
Target Start/End: Original strand, 17704314 - 17704365
Alignment:
Q  744 ctataataatgttatattgttgatgttatt-aaaaagataagaaattttgtt 794  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  17704314 ctataacaatgttatattattgatgttattaaaaaagataagaatttttgtt 17704365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 745 - 799
Target Start/End: Complemental strand, 42522778 - 42522723
Alignment:
Q  745 tataataatgttatattgttgatgttatta-aaaagataagaaattttgttatatt 799  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| |||||||    
T  42522778 tataataatgttatattgttggtgttattaaaaaatataagaatttttattatatt 42522723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 5571646 - 5571683
Alignment:
Q  195 aaaatttaaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||| | |||||||||||||||||||||||||||||    
T  5571646 aaaattcatatttttgtccctcaccaaaccacaacaca 5571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 22432320 - 22432382
Alignment:
Q  204 atttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    |||||||||||||| |||||||||||||    ||| |||||||||| |||||| || ||||||||||    
T  22432320 atttttgtccctcatcaaaccacaacac----aattttttgtctcaagtacaagttgtctaaaatac 22432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 26647302 - 26647347
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||    
T  26647302 tttgttatattaatgttgtaattgaaaacaataaatatggtttgtt 26647347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 26918886 - 26918931
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||    
T  26918886 tttgttatattaatgttgtaattgaaaacaataaatatggtttgtt 26918931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 789 - 834
Target Start/End: Complemental strand, 42422671 - 42422626
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||    
T  42422671 tttgttatattattgttctcattgaaaaagataaatttggtttgtt 42422626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 5e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 744 - 831
Target Start/End: Complemental strand, 3086145 - 3086057
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaagataa-gaaattttgttatattattgttgttattgaaaatgataaatatggttt 831  Q
    |||||| || |||||||||||| | | |||||||| | || |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3086145 ctataacaacgttatattgttggtctcattaaaaaaaaaaagaaattttgttatattattgttgtcattgaaaaagataaatatggttt 3086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 744 - 834
Target Start/End: Complemental strand, 29689105 - 29689015
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||| |||||||  |||||||||||| |||||||| ||||||||||| |||||||| ||||||||  ||||||||| ||||||    
T  29689105 ctataataatgtt-tattgttagtgttattaaaaaagataagaatttttgttatatcattgttgtcattgaaaaatataaatatgttttgtt 29689015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 745 - 801
Target Start/End: Complemental strand, 14487141 - 14487084
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaa-gataagaaattttgttatattat 801  Q
    ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  14487141 tataataatgttatattgttggtgttattaaaaaggataagaatttttgttatattat 14487084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 746 - 799
Target Start/End: Complemental strand, 11067151 - 11067097
Alignment:
Q  746 ataataatgttatattgttgatgttatta-aaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  11067151 ataataatgttatattgttggtgttattaaaaaagataagaatttttgttatatt 11067097  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 799
Target Start/End: Complemental strand, 4968759 - 4968704
Alignment:
Q  745 tataataatgttatattgttgatgttattaa-aaagataagaaattttgttatatt 799  Q
    ||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||    
T  4968759 tataataatgttatattgttggtgttattaagatagataagaatttttgttatatt 4968704  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 6711063 - 6711188
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacacatttaat 238  Q
    ||||||||||||||||||||   ||||||||  ||  |||||  ||||||| |||||||  | | ||||||||||||||||||||||||||||    |||    
T  6711063 tgatttgtaaaactgtttcaggtacaggaca--aactagaggcaagggacaggacaaaaactcatatttttgtccctcaccaaaccacaacac----aat 6711156  T
Q  239 attttgtctcacgtacaaattatctaaaatac 270  Q
     ||||||| ||||||||| || ||||||||||    
T  6711157 tttttgtcccacgtacaagttgtctaaaatac 6711188  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 16095813 - 16095857
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  16095813 tttgttatattattgttgttattgaaaa-gataaatatgatttgtt 16095857  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 834
Target Start/End: Original strand, 43020808 - 43020853
Alignment:
Q  789 tttgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||    
T  43020808 tttgttatattatttttgtcattgaaaaagataaatatggtttgtt 43020853  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 13994153 - 13994217
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    ||||||||||||||||||||||||||||||    ||  |||||||||| |||||| || ||||||||||    
T  13994153 aaatttttgtccctcaccaaaccacaacac----aactttttgtctcatgtacaagttgtctaaaatac 13994217  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 791 - 834
Target Start/End: Original strand, 15716915 - 15716958
Alignment:
Q  791 tgttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  15716915 tgttatattattgttgtcattaaaaatgataaagatggtttgtt 15716958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 2761643 - 2761698
Alignment:
Q  211 tccctcaccaaaccacaacacatttaatattttgtctcacgtacaaattatctaaaatac 270  Q
    |||||||| ||||||||||||| ||    |||||||||| ||||||||||||||||||||    
T  2761643 tccctcactaaaccacaacacaatt----ttttgtctcaagtacaaattatctaaaatac 2761698  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 6029379 - 6029409
Alignment:
Q  202 aaatttttgtccctcaccaaaccacaacaca 232  Q
    |||||||||||||||||||||||||||||||    
T  6029379 aaatttttgtccctcaccaaaccacaacaca 6029409  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 32289361 - 32289452
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||   ||||||||  |||  ||||  |||||||||||||||  | | |||||||||||||||||||||||| ||||    
T  32289361 tgatttgtaaaactgtttcaggtacaggaca--aattggaggcaagggacaagacaaaaactcatatttttgtccctcaccaaaccacagcaca 32289452  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 51264652 - 51264561
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaatttaa-atttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||   ||||||||  ||   ||||  |||||||||||||||  | | |||||||||||||||||||||||||||||    
T  51264652 tgatttgtaaaactgtttcaggtacaggaca--aactggaggcaagggacaagacaaaaactcatatttttgtccctcaccaaaccacaacaca 51264561  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 793 - 834
Target Start/End: Complemental strand, 4653802 - 4653761
Alignment:
Q  793 ttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||||||||| ||||||||  ||||||||||||||||    
T  4653802 ttatattattgttgtcattgaaaaatataaatatggtttgtt 4653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 793 - 834
Target Start/End: Complemental strand, 47401486 - 47401445
Alignment:
Q  793 ttatattattgttgttattgaaaatgataaatatggtttgtt 834  Q
    ||||||||| ||||| |||||||| |||||||||||||||||    
T  47401486 ttatattatcgttgtcattgaaaaagataaatatggtttgtt 47401445  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 834
Target Start/End: Original strand, 11677 - 11776
Alignment:
Q  744 ctataataatgttatattgttgatgttattaaaaa-gataagaaattttgttat---------attattgttgttattgaaaatgataaatatggtttgt 833  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||||||         ||||||||||| ||||||||| |||||||||||||||    
T  11677 ctataataatgttatattgttggtgttattaaaaaagataagaatttttgttatatttattatattattgttgtcattgaaaat-ataaatatggtttgt 11775  T

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Target: scaffold0650 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 1591 - 1682
Alignment:
Q  140 tgatttgtaaaactgtttcaaagacaggacacaaatcagaggttagggacaagacaaaattt-aaatttttgtccctcaccaaaccacaacaca 232  Q
    ||||||||||||||||||||| || ||||||  ||   ||||  |||||||||||||||  | |||||||||||||||||||||||||||||||    
T  1591 tgatttgtaaaactgtttcaaggataggaca--aactggaggcaagggacaagacaaaaactgaaatttttgtccctcaccaaaccacaacaca 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 744 - 799
Target Start/End: Complemental strand, 2104 - 2048
Alignment:
Q  744 ctataataatgttatattgttgatgttatta-aaaagataagaaattttgttatatt 799  Q
    |||||||||||||||||||||  |||||||| |||||||||||| |||| |||||||    
T  2104 ctataataatgttatattgtttgtgttattaaaaaagataagaatttttattatatt 2048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 745 - 826
Target Start/End: Original strand, 97023 - 97112
Alignment:
Q  745 tataataatgttatattgttgatgttattaaaaagataagaaat--------tttgttatattattgttgttattgaaaatgataaatat 826  Q
    ||||||||| ||||||||||| ||| |||||||| ||||||| |        ||||||||||||||||||| |||||||| |||||||||    
T  97023 tataataatattatattgttggtgtgattaaaaaaataagaattttgttatatttgttatattattgttgtcattgaaaaagataaatat 97112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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