View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_102 (Length: 233)
Name: NF1739_low_102
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_102 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 48173736 - 48173858
Alignment:
| Q |
16 |
catgtcacatttggagagacaaagtcaataacaaaatcgcttaaaacaattttattaaatctctcaaatgttatttccattgattatatgaagaatataa |
115 |
Q |
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| T |
48173736 |
catgtcacatttggagagacaaagtcaataacaaaatcgcttaaaacaatttgattaaatctctcaaatgttatttccattgattatatgaagaatataa |
48173835 |
T |
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| Q |
116 |
aatgccaaataatatataatcta |
138 |
Q |
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| T |
48173836 |
aatgccaaataatatataatcta |
48173858 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 48173887 - 48173943
Alignment:
| Q |
167 |
gaaacattgtgataatttaattacctggtgttctggttataaggttattattttctt |
223 |
Q |
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| T |
48173887 |
gaaacattgtgataatttaattacctggtgttctggttataaggttattattttctt |
48173943 |
T |
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