View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_108 (Length: 227)
Name: NF1739_low_108
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_108 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 44223520 - 44223740
Alignment:
| Q |
2 |
gttaaagatatctaaaagccgaatgtatcagtttgtgcgactcttaccactggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggct |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44223520 |
gttaaagatatctaaaagccgaacgtatcagtttgtgcgaatcttaccactggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggtt |
44223619 |
T |
|
| Q |
102 |
caaatggaagaaccattccctttttctttccatggctggactctgtaacagaatcagctcttcctgaactttctgaaagacaataagaaaaatgttcagc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44223620 |
caaatggaagaaccattccctttttctttccatggctggactctgtaacagaatcagctcttcctgaactttctgaaagacaataagaaaaatgttcagc |
44223719 |
T |
|
| Q |
202 |
tactaaactatatgataaact |
222 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
44223720 |
tactaaactatatgataaact |
44223740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 44234349 - 44234562
Alignment:
| Q |
9 |
atatctaaaagccgaatgtatcagtttgtgcgactcttaccactggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggctcaaatgg |
108 |
Q |
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|||||||||||| ||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44234349 |
atatctaaaagctgaacatatcactttgtgcgagtcttaccgctggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatgg |
44234448 |
T |
|
| Q |
109 |
aagaaccattccctttttctttccatggctggactctgtaacagaatcagctcttcctgaactttctgaaagacaataagaaaaatgttcagctactaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44234449 |
aagaaccattccctttttctttccatggctggattctgtaacagaatctcttctacctgaactttctgaaagacaataggaaaaatgttcagctactaaa |
44234548 |
T |
|
| Q |
209 |
ctatatgataaact |
222 |
Q |
| |
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|||||||||||||| |
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| T |
44234549 |
ctatatgataaact |
44234562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 44211358 - 44211578
Alignment:
| Q |
2 |
gttaaagatatctaaaagccgaatgtatcagtttgtgcgactcttaccactggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggct |
101 |
Q |
| |
|
|||| ||||||||||| || ||| ||||| ||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44211358 |
gttatagatatctaaacgctgaacatatcactttgtaagagtcttacagctggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggtt |
44211457 |
T |
|
| Q |
102 |
caaatggaagaaccattccctttttctttccatggctggactctgtaacagaatcagctcttcctgaactttctgaaagacaataagaaaaatgttcagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44211458 |
caaatggaagaaccattccctttttctttccatggctggacactgtaacagaatctcctcttcctgaactttctgaaagacaataagaaaaatgttcagc |
44211557 |
T |
|
| Q |
202 |
tactaaactatatgataaact |
222 |
Q |
| |
|
|||||||||||| ||||| |
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| T |
44211558 |
atataaactatatgacaaact |
44211578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 2876723 - 2876644
Alignment:
| Q |
59 |
tcaacagagtatacaatatcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttctttccatggct |
138 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||| ||| ||||| || |||||||||||| ||| ||| ||| |||| |
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| T |
2876723 |
tcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattcccctttccttcccacggct |
2876644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 2886735 - 2886667
Alignment:
| Q |
52 |
tggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc |
120 |
Q |
| |
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|||||| |||||||| ||||||| ||| ||||| | ||||||||||| ||||| |||||||||||||| |
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| T |
2886735 |
tggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
2886667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 39338002 - 39337952
Alignment:
| Q |
77 |
tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc |
127 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39338002 |
tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc |
39337952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 39349179 - 39349129
Alignment:
| Q |
77 |
tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc |
127 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39349179 |
tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc |
39349129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 39365652 - 39365609
Alignment:
| Q |
77 |
tcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc |
120 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
39365652 |
tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcc |
39365609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 39538618 - 39538661
Alignment:
| Q |
77 |
tcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc |
120 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||||||||| |
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|
| T |
39538618 |
tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcc |
39538661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 39564836 - 39564886
Alignment:
| Q |
77 |
tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc |
127 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
39564836 |
tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc |
39564886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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