View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_112 (Length: 218)
Name: NF1739_low_112
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 42636479 - 42636671
Alignment:
| Q |
12 |
agatgaactaaacagaacagattattcagtagtgcttatttcagttcataatgatatatttagaaatccaaagacatattgtggcactaatactatcatc |
111 |
Q |
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| T |
42636479 |
agatgaactaaacagaacagattattcaatagtgcttatttcagttcataatgatatatttagaaatccaaggacatattgtggcactaatactatcatc |
42636578 |
T |
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| Q |
112 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcgtatttacttcaagaatttattg |
204 |
Q |
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| T |
42636579 |
ttgcttagataaagattattcaactatttcaaggaccttatatagcactgccctgaaaaatattacatgcggatttacttcaagaatttattg |
42636671 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 20458532 - 20458569
Alignment:
| Q |
105 |
tatcatcttgcttagataaagattattcaactatttca |
142 |
Q |
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| T |
20458532 |
tatcatcttgcttagataaagatcattcaactatttca |
20458569 |
T |
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