View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_113 (Length: 211)
Name: NF1739_low_113
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_113 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 45944269 - 45944451
Alignment:
| Q |
16 |
agcaaagggggttggtttggtaattttaactttctcaagcagatcatgatatgttgcaacattaggctgaaaaacgaacattccagcattgaaatataga |
115 |
Q |
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| T |
45944269 |
agcaaagggggttggtttggtaattttaactttctcaagcagatcatgatatgttgcaacattaggctgaaaaacgaacattccagcattgaaatataga |
45944368 |
T |
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| Q |
116 |
ggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaatcttatactgaggagtgtg |
198 |
Q |
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| T |
45944369 |
ggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaatcttatactgaggagtgtg |
45944451 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 37687222 - 37687309
Alignment:
| Q |
87 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagta |
174 |
Q |
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| T |
37687222 |
aaacaaacatgccagcattgaaatatagaggaggtttgggcccaaagttagcaggccactgaaccttgtcagggcactgttgacagta |
37687309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 37698296 - 37698209
Alignment:
| Q |
87 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagta |
174 |
Q |
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| T |
37698296 |
aaacaaacatgccagcattgaaatatagaggaggtttgggcccaaagttagcaggccactgaaccttgtcagggcactgttgacagta |
37698209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 55222231 - 55222138
Alignment:
| Q |
87 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaat |
180 |
Q |
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| T |
55222231 |
aaacaaacatgccagcattgaaatacaaaggtggtttggatccaaagttagagggccattgaaccttgtctggacattgctgacagtaaccaat |
55222138 |
T |
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