View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_114 (Length: 207)
Name: NF1739_low_114
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 41750216 - 41750022
Alignment:
| Q |
3 |
taacgtatacgctatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcatgtgaaatcacccaataca |
102 |
Q |
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| T |
41750216 |
taacgtatacgttatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcatgtgaaatcacccaataca |
41750117 |
T |
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| Q |
103 |
tgcactaatactatactatacacttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggcttctctctttgcttcatctc |
197 |
Q |
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| T |
41750116 |
tgcactaatactatactatacacttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggcttctctctttgcttcttctc |
41750022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 41756890 - 41756775
Alignment:
| Q |
1 |
tgtaacgtatacgctatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcatgtgaaatcacccaata |
100 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
41756890 |
tgtaacgtatacgttatcattaacgatatacggtgatacgacatgatcattttagagtagtatttatacgtattctacatgcgtgtg-aatcacccaata |
41756792 |
T |
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| Q |
101 |
catgcactaatactata |
117 |
Q |
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| T |
41756791 |
catgcactaatactata |
41756775 |
T |
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