View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_115 (Length: 206)

Name: NF1739_low_115
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_115
NF1739_low_115
[»] chr8 (12 HSPs)
chr8 (15-197)||(6273489-6273671)
chr8 (15-197)||(6287740-6287922)
chr8 (15-194)||(6362163-6362342)
chr8 (15-197)||(6320368-6320550)
chr8 (15-197)||(6330830-6331012)
chr8 (15-194)||(7458019-7458198)
chr8 (15-194)||(7470421-7470600)
chr8 (15-194)||(6351278-6351457)
chr8 (15-195)||(6423195-6423375)
chr8 (19-197)||(6409173-6409351)
chr8 (15-143)||(6368938-6369063)
chr8 (15-194)||(6389920-6390096)
[»] chr2 (1 HSPs)
chr2 (97-154)||(42692288-42692345)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 6273489 - 6273671
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273489 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 6273588  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273589 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 6273671  T

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Target: chr8; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 6287740 - 6287922
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||| | |||||||  |||||||||||  | || ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  6287740 agcaatccatatgaggatggtgcaagcctcaatcaactccttacgggtttgcatcttaaaccaccatttagcatctttcaagtcaccgtgacctacctct 6287839  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 197  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6287840 acaagttctttccagaatgcttggagttcagaatcttgtgcaatatttgcatctgacttgtagtagaaatacacatattcttc 6287922  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 6362163 - 6362342
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||||| |||||||  |||||||||||    |||||||||||||||| ||||||| ||||||| ||||||||||| ||||| ||||||    
T  6362163 agcaatccatatgagggtggtgcaagcttcaatcaactcctcacgagtttgcatcttaaaccaccatgtagcattcttcaagtcaccatgaccgacctct 6362262  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 194  Q
    |||||||||||||| |||||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||    
T  6362263 acaagttctttccagaatgcttggagttcagaatcttgtgcaatagatgcatctgacttgtagtagaaattgacatattc 6362342  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 6320368 - 6320550
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||| |||||||||  |||||||||||||| | |||||||||||||| ||||||| ||||||| ||||| ||||| ||||| ||||||    
T  6320368 agcaatccatatgaggatagtgcaagcttcaatcaactctgtacaagtttgcatcttaaaccaccatgtagcattcttcaaatcaccatgacccacctct 6320467  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 197  Q
    |||| |||| ||||||||||||| ||||||||||||||  ||| |    ||||||||||||||||||||||||||||||||||    
T  6320468 acaacttctctccaaaatgcttgcagttcagaatcttgcgcaacagcaacatctgacttgtagtagaaattcacatattcttc 6320550  T

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Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 6330830 - 6331012
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||| |||||||||  |||||||||||||| | |||||||||||||| ||||||| ||||||| ||||| ||||| ||||| ||||||    
T  6330830 agcaatccatatgaggatagtgcaagcttcaatcaactctgtacaagtttgcatcttaaaccaccatgtagcattcttcaaatcaccatgacccacctct 6330929  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 197  Q
    |||| |||| ||||||||||||| ||||||||||||||  ||| |   ||||||||| ||||||||||| |||||||||||||    
T  6330930 acaacttctctccaaaatgcttgcagttcagaatcttgcgcaacagcagcatctgacgtgtagtagaaactcacatattcttc 6331012  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 7458019 - 7458198
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||  | |||||||  ||  ||||||| || ||  |||||||||||| ||||||| | |||||  | |||||||| ||||| ||||||    
T  7458019 agcaatccatatgagaatggtgcaagcttctttcaactccgtacggttttgcatcttaaaccaccatgttgcattcctaaagtcaccatgacccacctct 7458118  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 194  Q
    |||||||||||||||||||||||||||||||||||||   ||| || |||||| ||||||||||||||||||||||||||    
T  7458119 acaagttctttccaaaatgcttggagttcagaatctttcacaacatctgcatcagacttgtagtagaaattcacatattc 7458198  T

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Target: chr8; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 7470421 - 7470600
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||  | |||||||  ||  ||||||| || ||  || ||||||||| ||||||| | |||||  | |||||||| ||||| ||||||    
T  7470421 agcaatccatatgagaatggtgcaagcttctttcaactccgtacggtttggcatcttaaaccaccatgttgcattcctaaagtcaccatgacccacctct 7470520  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 194  Q
    |||||||||||||||||||||||||||||||||||||   ||| || |||||| ||||||||||||||||||||||||||    
T  7470521 acaagttctttccaaaatgcttggagttcagaatctttcacaacatctgcatcagacttgtagtagaaattcacatattc 7470600  T

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Target: chr8; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 6351278 - 6351457
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||| ||| | ||| |||  || |||||||||   || ||||||||||||| ||||||| | ||||| |||| |||||| ||||||||||||    
T  6351278 agcaatccatataaggatggtggaagcttcgatcaactcttcacgggtttgcatcttaaaccaccatgtggcattcttcaggtcaccatgaccaacctct 6351377  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 194  Q
    |||||||| ||||| |||||||||||||||| ||||||| ||||    ||||| |||||||| |||||||||||||||||    
T  6351378 acaagttccttccagaatgcttggagttcagcatcttgtgcaatggcagcatcagacttgtaatagaaattcacatattc 6351457  T

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Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 6423195 - 6423375
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||| ||| | ||| |||  || |||||||| |  |||||||||||||||| ||||||| | ||| | || |||||||| ||||| ||||||    
T  6423195 agcaatccatataaggatggtggaagcttcgatcaactccgcacgagtttgcatcttaaaccaccatgtggcactctttaagtcaccatgacccacctct 6423294  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattct 195  Q
    |||||||| ||||| |||||||||||||||| ||||||| ||||    |||||||| |||||||||||| |||||||||||    
T  6423295 acaagttccttccagaatgcttggagttcagcatcttgtgcaatggcagcatctgatttgtagtagaaactcacatattct 6423375  T

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Target: chr8; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 6409173 - 6409351
Alignment:
Q  19 atccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaa 118  Q
    ||||| |||||||| |||||||  |||||||||||||  ||||||| |||||||| ||||||| | ||||  ||||||||||| || || || |||||||    
T  6409173 atccaaatgagggtggtgcaagtttcaatcaactctgcacgagttttcatcttaaaccaccatgttgcatccttcaagtcaccatggcccacttctacaa 6409272  T
Q  119 gttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattcttc 197  Q
    |||||||||| ||||||||||| || ||||| | | ||| |  |||||||  |||||| |||||||| |||||||||||    
T  6409273 gttctttccagaatgcttggagctcggaatcatctgcaacagctgcatctagcttgtaatagaaatttacatattcttc 6409351  T

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Target: chr8; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 6368938 - 6369063
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||||| |||||||  |||||||||||||| ||||||| ||  |||||||||   ||| || | ||||||||||| ||||| || |||    
T  6368938 agcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccac---ttatcagtcttcaagtcaccatgacctacttct 6369034  T
Q  115 acaagttctttccaaaatgcttggagttc 143  Q
    |||||||||||||||||||||| ||||||    
T  6369035 acaagttctttccaaaatgctttgagttc 6369063  T

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Target: chr8; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 6389920 - 6390096
Alignment:
Q  15 agcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctct 114  Q
    |||||||||||||||||| |||||||  |||||||||||||| ||||||| ||  |||||||||   ||| || | ||| ||||||| ||||| || |||    
T  6389920 agcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccac---ttatcagtcttcgagtcaccatgacccacttct 6390016  T
Q  115 acaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 194  Q
    |||||||||||||||||||||| ||||||   ||| | |  || || |  ||||||||||||||||||||| ||||||||    
T  6390017 acaagttctttccaaaatgctttgagttcctcatcatctttaacatctttatctgacttgtagtagaaattgacatattc 6390096  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 42692288 - 42692345
Alignment:
Q  97 tcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtc 154  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||    
T  42692288 tcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttgtc 42692345  T

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