View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_117 (Length: 206)

Name: NF1739_low_117
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_117
NF1739_low_117
[»] chr7 (19 HSPs)
chr7 (51-206)||(37476876-37477031)
chr7 (49-206)||(15238496-15238655)
chr7 (48-206)||(18037092-18037249)
chr7 (59-140)||(29737324-29737406)
chr7 (49-140)||(42611991-42612082)
chr7 (48-140)||(15577640-15577732)
chr7 (49-140)||(35445577-35445668)
chr7 (50-140)||(34483018-34483108)
chr7 (52-140)||(4974532-4974620)
chr7 (49-140)||(42696263-42696355)
chr7 (40-140)||(45637891-45637991)
chr7 (50-140)||(24395151-24395241)
chr7 (48-140)||(3962158-3962250)
chr7 (50-132)||(25167651-25167733)
chr7 (50-140)||(35876424-35876514)
chr7 (48-140)||(15329454-15329546)
chr7 (49-140)||(48880721-48880812)
chr7 (50-140)||(30848749-30848839)
chr7 (161-206)||(45637826-45637871)
[»] chr3 (38 HSPs)
chr3 (50-206)||(9796824-9796980)
chr3 (46-148)||(8361830-8361932)
chr3 (50-140)||(47738291-47738382)
chr3 (47-140)||(40328011-40328105)
chr3 (42-140)||(3456244-3456342)
chr3 (48-140)||(36864825-36864918)
chr3 (52-140)||(33145892-33145980)
chr3 (49-140)||(41224414-41224505)
chr3 (50-140)||(24343729-24343820)
chr3 (50-140)||(26612926-26613017)
chr3 (50-140)||(3089599-3089689)
chr3 (47-140)||(3137206-3137299)
chr3 (47-140)||(6042057-6042150)
chr3 (47-140)||(34482680-34482773)
chr3 (47-140)||(37216845-37216938)
chr3 (48-140)||(22426138-22426230)
chr3 (48-140)||(33113974-33114066)
chr3 (45-140)||(30385580-30385675)
chr3 (62-140)||(33839715-33839794)
chr3 (50-140)||(2754899-2754989)
chr3 (50-140)||(19650695-19650785)
chr3 (50-140)||(37522233-37522323)
chr3 (51-140)||(8320378-8320467)
chr3 (52-140)||(42921305-42921394)
chr3 (50-140)||(3574321-3574411)
chr3 (51-140)||(46919074-46919164)
chr3 (48-140)||(48161086-48161178)
chr3 (161-206)||(8361951-8361996)
chr3 (62-126)||(3456076-3456141)
chr3 (161-206)||(3456178-3456223)
chr3 (54-126)||(8320572-8320645)
chr3 (161-206)||(41224347-41224392)
chr3 (161-206)||(42297978-42298023)
chr3 (164-193)||(46919024-46919053)
chr3 (62-126)||(47738117-47738182)
chr3 (62-126)||(48160917-48160982)
chr3 (75-139)||(41883042-41883106)
chr3 (161-189)||(42297485-42297513)
[»] chr6 (20 HSPs)
chr6 (45-206)||(11548379-11548539)
chr6 (44-140)||(29693625-29693722)
chr6 (50-140)||(33695121-33695211)
chr6 (46-140)||(33696877-33696971)
chr6 (47-140)||(23290873-23290966)
chr6 (48-140)||(28675328-28675420)
chr6 (48-140)||(17705262-17705353)
chr6 (48-140)||(32702385-32702477)
chr6 (40-140)||(2309208-2309308)
chr6 (50-140)||(17175816-17175906)
chr6 (61-140)||(6031546-6031625)
chr6 (50-103)||(582522-582576)
chr6 (50-140)||(18365369-18365459)
chr6 (50-140)||(18370633-18370723)
chr6 (54-126)||(9752233-9752305)
chr6 (77-140)||(18889466-18889529)
chr6 (51-113)||(34238883-34238945)
chr6 (161-206)||(25987044-25987089)
chr6 (161-189)||(8515632-8515660)
chr6 (62-126)||(18889685-18889749)
[»] chr1 (29 HSPs)
chr1 (48-206)||(33786424-33786586)
chr1 (50-148)||(32000061-32000159)
chr1 (52-148)||(40273880-40273976)
chr1 (47-140)||(18404628-18404721)
chr1 (52-140)||(44690818-44690907)
chr1 (48-139)||(20304923-20305014)
chr1 (50-140)||(9910086-9910176)
chr1 (53-126)||(33786623-33786696)
chr1 (51-140)||(40215168-40215257)
chr1 (41-140)||(10167579-10167679)
chr1 (48-140)||(51737685-51737777)
chr1 (50-140)||(3559797-3559887)
chr1 (47-140)||(27523047-27523141)
chr1 (50-140)||(37821629-37821719)
chr1 (46-140)||(44094877-44094971)
chr1 (40-140)||(19015584-19015684)
chr1 (50-126)||(19722894-19722970)
chr1 (48-140)||(36966501-36966593)
chr1 (48-140)||(41876235-41876327)
chr1 (50-140)||(25463856-25463946)
chr1 (50-140)||(25973587-25973677)
chr1 (161-206)||(40273816-40273861)
chr1 (50-140)||(6883667-6883757)
chr1 (41-99)||(52064364-52064422)
chr1 (161-206)||(32000173-32000218)
chr1 (161-206)||(36966614-36966659)
chr1 (54-126)||(40273706-40273779)
chr1 (161-206)||(44094812-44094857)
chr1 (161-189)||(51621057-51621085)
[»] chr5 (18 HSPs)
chr5 (50-206)||(22912852-22913005)
chr5 (49-147)||(17545476-17545574)
chr5 (40-140)||(3521793-3521892)
chr5 (49-140)||(12614531-12614623)
chr5 (50-140)||(2477816-2477906)
chr5 (50-140)||(6043307-6043397)
chr5 (50-140)||(8145553-8145643)
chr5 (49-140)||(4892382-4892473)
chr5 (49-140)||(37321587-37321678)
chr5 (50-140)||(33584124-33584214)
chr5 (51-140)||(3362959-3363048)
chr5 (48-140)||(25398418-25398510)
chr5 (49-140)||(14138847-14138938)
chr5 (53-140)||(12850982-12851069)
chr5 (50-140)||(38899520-38899611)
chr5 (164-206)||(17545594-17545636)
chr5 (161-206)||(3362892-3362937)
chr5 (91-140)||(4433844-4433893)
[»] chr8 (37 HSPs)
chr8 (47-148)||(7017650-7017751)
chr8 (48-206)||(7022092-7022251)
chr8 (48-138)||(31347569-31347659)
chr8 (52-140)||(37132477-37132566)
chr8 (50-140)||(3596836-3596926)
chr8 (52-140)||(20091598-20091686)
chr8 (52-140)||(34665561-34665649)
chr8 (49-140)||(32064926-32065017)
chr8 (49-137)||(30834849-30834938)
chr8 (53-140)||(3890412-3890500)
chr8 (49-140)||(1503637-1503728)
chr8 (45-140)||(17841640-17841735)
chr8 (49-140)||(26041907-26041998)
chr8 (49-140)||(37985850-37985941)
chr8 (49-140)||(40779923-40780014)
chr8 (50-140)||(6108028-6108118)
chr8 (50-140)||(10044528-10044618)
chr8 (50-140)||(30055696-30055786)
chr8 (50-140)||(42754837-42754927)
chr8 (51-140)||(14129039-14129128)
chr8 (44-140)||(24844649-24844746)
chr8 (52-140)||(38017112-38017201)
chr8 (48-140)||(1645757-1645849)
chr8 (52-140)||(24211169-24211257)
chr8 (49-140)||(15187740-15187831)
chr8 (77-140)||(41819590-41819653)
chr8 (50-140)||(25581034-25581124)
chr8 (161-206)||(7017771-7017816)
chr8 (54-126)||(41819766-41819839)
chr8 (62-140)||(32394037-32394114)
chr8 (62-126)||(15187572-15187637)
chr8 (95-140)||(27835293-27835338)
chr8 (161-206)||(31347688-31347733)
chr8 (161-206)||(37985961-37986006)
chr8 (61-130)||(39772608-39772677)
chr8 (161-206)||(40780035-40780080)
chr8 (161-189)||(30055647-30055675)
[»] chr4 (37 HSPs)
chr4 (48-140)||(37219811-37219904)
chr4 (52-148)||(24392846-24392942)
chr4 (44-140)||(24128419-24128515)
chr4 (40-140)||(44893606-44893706)
chr4 (49-140)||(21802114-21802205)
chr4 (50-140)||(36073256-36073347)
chr4 (45-140)||(53123211-53123306)
chr4 (42-140)||(46442024-46442122)
chr4 (48-140)||(11314044-11314137)
chr4 (52-140)||(17655610-17655699)
chr4 (50-137)||(42671851-42671939)
chr4 (37-140)||(4751627-4751730)
chr4 (49-140)||(10442581-10442672)
chr4 (49-140)||(44893007-44893098)
chr4 (45-140)||(49387677-49387772)
chr4 (47-140)||(2625017-2625110)
chr4 (43-140)||(9089050-9089147)
chr4 (51-140)||(44744612-44744698)
chr4 (48-140)||(22199439-22199531)
chr4 (44-140)||(50156368-50156463)
chr4 (49-140)||(7744906-7744997)
chr4 (50-140)||(33530479-33530569)
chr4 (50-140)||(36073529-36073619)
chr4 (1-49)||(26907635-26907684)
chr4 (60-140)||(23964269-23964349)
chr4 (48-140)||(31078612-31078704)
chr4 (49-140)||(37934735-37934827)
chr4 (48-140)||(47290246-47290338)
chr4 (77-140)||(30563389-30563452)
chr4 (47-140)||(36073131-36073224)
chr4 (50-99)||(25063369-25063419)
chr4 (161-206)||(24392781-24392826)
chr4 (161-206)||(24128353-24128398)
chr4 (161-206)||(36073061-36073106)
chr4 (161-206)||(53123145-53123190)
chr4 (50-90)||(53998979-53999020)
chr4 (161-189)||(49387794-49387822)
[»] chr2 (22 HSPs)
chr2 (49-206)||(43331026-43331183)
chr2 (50-141)||(9723585-9723677)
chr2 (52-148)||(21393483-21393578)
chr2 (48-140)||(22592890-22592985)
chr2 (50-140)||(9293370-9293460)
chr2 (40-140)||(23267847-23267947)
chr2 (50-140)||(7475303-7475393)
chr2 (50-140)||(10662068-10662158)
chr2 (50-140)||(33380387-33380477)
chr2 (50-140)||(35160939-35161029)
chr2 (48-140)||(13355028-13355120)
chr2 (54-140)||(3989256-3989342)
chr2 (75-140)||(37335824-37335889)
chr2 (78-140)||(16767285-16767347)
chr2 (54-126)||(13354850-13354923)
chr2 (161-206)||(21393594-21393639)
chr2 (92-140)||(14941201-14941249)
chr2 (92-148)||(34320994-34321050)
chr2 (53-112)||(31174633-31174692)
chr2 (161-206)||(3989190-3989235)
chr2 (161-206)||(23267968-23268013)
chr2 (45-89)||(27847791-27847836)
[»] scaffold0471 (2 HSPs)
scaffold0471 (44-140)||(13022-13118)
scaffold0471 (161-206)||(12956-13001)
[»] scaffold0204 (1 HSPs)
scaffold0204 (50-140)||(4576-4666)
[»] scaffold0178 (1 HSPs)
scaffold0178 (50-140)||(11801-11891)
[»] scaffold0228 (2 HSPs)
scaffold0228 (48-140)||(16164-16256)
scaffold0228 (48-140)||(26116-26208)
[»] scaffold0085 (1 HSPs)
scaffold0085 (50-140)||(48029-48119)
[»] scaffold0096 (1 HSPs)
scaffold0096 (50-140)||(41190-41280)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 37476876 - 37477031
Alignment:
Q  51 gaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcatnn 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| | |||||||||||||||| |||||||| ||| ||      
T  37476876 gaaaatgctagatatcaagaatgatttatcaagaaagatttaataatgacatggcacaataatcacccttagatttcagtctcatttattcattttatac 37476975  T
Q  151 nnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
              ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  37476976 agaaaaaaaatacataacacccaccaccccatgatttccggcccgacagagatttt 37477031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 15238655 - 15238496
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| ||||||    
T  15238655 aggaaaatgctagatatcaagaatgatttatcaaaaaatatttaagaatgacatgacacaataatcatccttagatttcagtctcatttattcctttcat 15238556  T
Q  149 --nnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
                  || |||||| ||||||||||||||||||| ||||||||||||||||    
T  15238555 aaaaaaaataaaaataaataacacccaccaccccatgatttccggcccgacagagatttt 15238496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 18037249 - 18037092
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttca 147  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||  |||||||| | |||||||||||||||  |||||||| | |||    
T  18037249 aaggaaaatgctagatatcaacaatgatttatcaagaaagatttaagaatgacatggtacaataatcacccttagatttcagtcacatttattcctctca 18037150  T
Q  148 tnnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    |            ||||||||| ||||||||||||||||||  ||||||||||||||||    
T  18037149 t-aaaaaaaaaaatacataacacccaccaccccatgatttctggcccgacagagatttt 18037092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 29737406 - 29737324
Alignment:
Q  59 tagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| | |||||||||||||||| |||||||    
T  29737406 tagatatcaagaatgattttatcaagaaagatttaagaataacatgtcacaataatcacccttagatttcagtctcatttatt 29737324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 42612082 - 42611991
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   ||||||||| ||||||||| ||| ||||||||| | | ||||||||||||||||||||||    
T  42612082 aggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaataatcacctttagatttcagtcttatttatt 42611991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 15577640 - 15577732
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||  |||||||| ||||||||||||| | | |||||||||||||| |||||||    
T  15577640 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgtcacaataatcacctttagatttcagtctcatttatt 15577732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 35445668 - 35445577
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||||||| ||||||||| | | |||||||||||||| |||||||    
T  35445668 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgatatgacacaataatcacctttagatttcagtctcatttatt 35445577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 34483108 - 34483018
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||| ||| |||||||    
T  34483108 ggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttatt 34483018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 4974532 - 4974620
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   || ||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  4974532 aaaatgctagatatcaagaatgattttataaaaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 4974620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 42696355 - 42696263
Alignment:
Q  49 aggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||| |||||||| ||||| ||| ||| |||||||| |||  |||||||| | |||||||||||||||| |||||||    
T  42696355 aggaaaatgttagatatcaataatgattttatcaaaaaaaattcaagaatgacatggtacaataatcacccttagatttcagtctcatttatt 42696263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 45637991 - 45637891
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    |||| ||| ||||||||| ||||||| |||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  45637991 attatttttaggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttat 45637892  T
Q  140 t 140  Q
    |    
T  45637891 t 45637891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 24395241 - 24395151
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   || ||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  24395241 ggaaaatgctagatatcaagaatgattttataaaaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 24395151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 3962250 - 3962158
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  3962250 aaggaaaatgctagatatcaagaatgattttataagaaatatccaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 3962158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 25167651 - 25167733
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtct 132  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | ||||||||||||||    
T  25167651 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtct 25167733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 35876514 - 35876424
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| || ||| ||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  35876514 ggaaaatgctagatatcaagaatgattttataagaaatatctaaaaatgacatggcacaataatcacctttagatttcagtctcatttatt 35876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 15329546 - 15329454
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| ||||||| |||||||||||   |||||| ||| |||||||| ||| ||||||||| |   |||||||||||||| |||||||    
T  15329546 aaggaaaatgctagatataaagaatgattttataagaaatattcaagaatgacatggcacaataatcacttttagatttcagtctcatttatt 15329454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 48880721 - 48880812
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| |   |||||||||||| | |||||||    
T  48880721 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacatttagatttcagtttcatttatt 48880812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 30848839 - 30848749
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| ||||||||||||||| |||   |||||| ||| |||||||| ||| ||||||||| | | ||| |||||||||| |||||||    
T  30848839 ggaaaatgctagatatcaagaatgcttttataagaaaaattcaagaatgacatggcacaataatcacctttaaatttcagtctcatttatt 30848749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 45637871 - 45637826
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  45637871 tacataacatccaccaccccatgatttccggccagactgagatttt 45637826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 9796824 - 9796980
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcatn 149  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||| |||||||| ||||||     
T  9796824 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatgtcacaataatcactcttagatttcagtctcatttattcctttcata 9796923  T
Q  150 nnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
               ||||||| | ||||||||||||||||| | ||||||||||||||||    
T  9796924 aaaaagaaaaatacataagacccaccaccccatgattttcggcccgacagagatttt 9796980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 8361830 - 8361932
Alignment:
Q  46 ttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattctttt 145  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||| |||    
T  8361830 ttaaggaaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatgacacaataatcacccttagatttcagtctcatttattcattt 8361929  T
Q  146 cat 148  Q
    |||    
T  8361930 cat 8361932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 47738382 - 47738291
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||    
T  47738382 ggaaaatgttagatatcaagaatgattttatcaagaaagattcaagaatgacatggcacaataatcatccttagatttcagtctcatttatt 47738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 40328105 - 40328011
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  40328105 taaggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttagatttcagtcttatttatt 40328011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 3456342 - 3456244
Alignment:
Q  42 taatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| |||| |||| ||| |||||||||||||| |||||||    
T  3456342 taatttaaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacactaatcatctttagatttcagtctcatttatt 3456244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 36864825 - 36864918
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  36864825 aaggaaaatgctagatatcaagaatgattttatcaaaaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 36864918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 33145980 - 33145892
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  33145980 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtcttatttatt 33145892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 41224505 - 41224414
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| | ||||| |||||| ||| |||||||    
T  41224505 aggaaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatggcacaataatcacccttaaatttcaatctcatttatt 41224414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 24343820 - 24343729
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||  |  ||||| | ||||||||||||||||||||||||    
T  24343820 ggaaaatgttagatatcaagaatgattttatcaaaaaagattcaagaatgacatgatatgataatcacccttagatttcagtcttatttatt 24343729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 26613017 - 26612926
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||| |||||||| || |||||||||| |||||| | ||| ||||||||| | |||||||||||||||| |||||||    
T  26613017 ggaaaatgttagatatcaataatgattttattaagaaagattcaagaataacatggcacaataatcacccttagatttcagtctcatttatt 26612926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 3089689 - 3089599
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   ||||||||| ||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  3089689 ggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 3089599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 3137206 - 3137299
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  3137206 taaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 3137299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 6042150 - 6042057
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  6042150 taaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 6042057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 34482680 - 34482773
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  34482680 taaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 34482773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 37216845 - 37216938
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||||||||||||   |||||||||| |||||||| |||  |||||||| | | |||||||||||||| |||||||    
T  37216845 taaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttatt 37216938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 22426138 - 22426230
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| |   |||||||||||||| |||||||    
T  22426138 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacatttagatttcagtctcatttatt 22426230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 33114066 - 33113974
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||| ||| |||||||    
T  33114066 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttatt 33113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 30385675 - 30385580
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||| |||||||| || ||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  30385675 tttatggaaaatgctaaatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 30385580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 33839794 - 33839715
Alignment:
Q  62 atatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| | ||||| |||||||||| |||||||    
T  33839794 atatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttaaatttcagtctcatttatt 33839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 2754989 - 2754899
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||| ||||   ||||||||||||||||||| ||| ||||||||| | | ||| |||||||||| |||||||    
T  2754989 ggaaaatgctagatatcaagaatcattttataagaaagatttaagaatgacatggcacaataatcacctttaaatttcagtctcatttatt 2754899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 19650695 - 19650785
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  19650695 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 19650785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 37522323 - 37522233
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||| ||| || |||||| | | |||||||||||||| |||||||    
T  37522323 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcataataatcacctttagatttcagtctcatttatt 37522233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 8320378 - 8320467
Alignment:
Q  51 gaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||||||| ||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  8320378 gaaaatgctagatatcaataatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 8320467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 42921394 - 42921305
Alignment:
Q  52 aaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| ||||||| ||||||||||| ||||||||| |||||||||||| ||| ||||| ||| | ||||| |||||||||| |||||||    
T  42921394 aaaatgctagatattaagaatgattttatcaagaaatatttaagaatgacatggcacaacaatcacccttaaatttcagtctcatttatt 42921305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 3574321 - 3574411
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | |  ||||||||||||| |||||||    
T  3574321 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctctagatttcagtctcatttatt 3574411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 46919164 - 46919074
Alignment:
Q  51 gaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||| |||||||| ||||||| || ||||| ||| || |||||| | |  |||||||| ||||||||||||    
T  46919164 gaaaatgttagatatcaagaatgattttatcaaaaaagattcaataatgacatggcagaataatcacctctagatttcggtcttatttatt 46919074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 48161178 - 48161086
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||  ||||| || ||| ||||||||| | | |||||||||||||| |||||||    
T  48161178 aaggaaaatgctagatatcaagaatgattttataagaaatatccaagaacgacatgacacaataatcacctttagatttcagtctcatttatt 48161086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 8361951 - 8361996
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  8361951 tacatgacacccaccaccccatgatttccggcccgacagagatttt 8361996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 3456076 - 3456141
Alignment:
Q  62 atatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||||||||| ||||| |||||||||  ||||||||||||||| || |||||| | ||||||||||    
T  3456076 atatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatcacccttagattt 3456141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 3456223 - 3456178
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  3456223 tacataacacccaccaccccatgatttccggccagactgagatttt 3456178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 8320645 - 8320572
Alignment:
Q  54 aatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||||| |||||||||| ||||| |||||||||  ||||||||||||||| || |||||| | ||||| ||||    
T  8320645 aatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggcaaaataatcacccttaaattt 8320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 41224392 - 41224347
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| |||||||||||||||||||  ||| |||||||||||    
T  41224392 tacataacacccaccaccccatgatttccgacccaacagagatttt 41224347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 42298023 - 42297978
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||||| ||||||||||||||||| ||| ||| ||||||||    
T  42298023 tacataacatctaccaccccatgatttccggccagactgagatttt 42297978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 46919053 - 46919024
Alignment:
Q  164 ataacatccaccaccccatgatttccagcc 193  Q
    ||||||||||||||||||||||||||||||    
T  46919053 ataacatccaccaccccatgatttccagcc 46919024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 47738117 - 47738182
Alignment:
Q  62 atatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||||||||| ||||| ||||||||| ||| |||||||||||| || |||||||| | ||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatgatatggcagaataattacctttagattt 47738182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 48160917 - 48160982
Alignment:
Q  62 atatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||||||||| ||||| |||||||||  ||||||||||||||| || |||||| | ||||||||||    
T  48160917 atatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatcacccttagattt 48160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 41883042 - 41883106
Alignment:
Q  75 tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    ||||| |||||||||| |||||||| |||  | |||||| ||| || ||||||||||||||||||    
T  41883042 tttatgaagaaagattcaagaatgacatggtaaaataatcatctttggatttcagtcttatttat 41883106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 42297513 - 42297485
Alignment:
Q  161 tacataacatccaccaccccatgatttcc 189  Q
    |||||||||||||||||||||||||||||    
T  42297513 tacataacatccaccaccccatgatttcc 42297485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 11548379 - 11548539
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttt 144  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||| ||    
T  11548379 tttaagaaaaatgctagatatcaagaatgatttatcaagaacgattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattcctt 11548478  T
Q  145 tcatnnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||            ||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  11548479 tcataaaaaagaaaaatacataacaccca-caccccatgatttccggcccgacagagatttt 11548539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 29693722 - 29693625
Alignment:
Q  44 atttaaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| || |||||| | ||||||||||||||||||||||||    
T  29693722 atttaaggaaaatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatgacccttagatttcagtcttatttatt 29693625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 33695121 - 33695211
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||||||||||||||||| | | |||||||||||||| |||||||    
T  33695121 ggaaaatgctagatatcaagaatgattttataagaaatatttaagaatgatatgtcacaataatcacctttagatttcagtctcatttatt 33695211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 33696971 - 33696877
Alignment:
Q  46 ttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  33696971 ttaaggaaaatgctagatatcaagaatgattttataagaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 33696877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 23290873 - 23290966
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||| ||||||||   |||||||||| |||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  23290873 taaggaaaatgctagatatcaaaaatgattttataagaaagattcaagaatgatatggcacaataattacctttagatttcagtctcatttatt 23290966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 28675420 - 28675328
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  28675420 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 28675328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 17705262 - 17705353
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  17705262 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatca-ccttagatttcagtctcatttatt 17705353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 32702477 - 32702385
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||||| | |||||||||||||| |||||||    
T  32702477 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataattacctttagatttcagtctcatttatt 32702385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 2309208 - 2309308
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    ||||| ||| |||||||| ||||||||||  |||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| ||||||    
T  2309208 attaaattatggaaaatgctagatatcaacgatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttat 2309307  T
Q  140 t 140  Q
    |    
T  2309308 t 2309308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 17175816 - 17175906
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||| |||  |||||||| | | |||||||||||||| |||||||    
T  17175816 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttatt 17175906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 6031546 - 6031625
Alignment:
Q  61 gatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||   || |||||||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  6031546 gatatcaagaatgattttataaaaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 6031625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 582522 - 582576
Alignment:
Q  50 ggaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatg 103  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  582522 ggaaaatgttagatatcaagaatgattttattaagaaaaatttaagaatgatatg 582576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 18365369 - 18365459
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  18365369 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttatt 18365459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 18370633 - 18370723
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  18370633 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttatt 18370723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 9752305 - 9752233
Alignment:
Q  54 aatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||||| ||||||||||  | ||||||||||| ||| |||||||||||| || |||||| | ||||||||||    
T  9752305 aatgttatatatcaagaaaaaattatcaagaaaaattcaagaatgatatggcagaataatcacccttagattt 9752233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 18889466 - 18889529
Alignment:
Q  77 tatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  18889466 tatcaagaatgattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 18889529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 34238883 - 34238945
Alignment:
Q  51 gaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataat 113  Q
    ||||||| |||||||||||||||| ||||||||| |||||| |||||||| ||| |||||||||    
T  34238883 gaaaatgctagatatcaagaatgattttatcaag-aagattcaagaatgacatgacacaataat 34238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 25987089 - 25987044
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  25987089 tacataacacccaccaccccatgatttccggccagactgagatttt 25987044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 8515632 - 8515660
Alignment:
Q  161 tacataacatccaccaccccatgatttcc 189  Q
    |||||||||||||||||||||||||||||    
T  8515632 tacataacatccaccaccccatgatttcc 8515660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 18889749 - 18889685
Alignment:
Q  62 atatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||||||||| ||||||||||||||  || |||||||| ||| || |||||| | ||||||||||    
T  18889749 atatcaagaaagatttatcaagaaaatttcaagaatgacatggcagaataataacccttagattt 18889685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 33786424 - 33786586
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttca 147  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||| |||||    
T  33786424 aaggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattcctttca 33786523  T
Q  148 t----nnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    |                | ||||||||||||||||||||||||||| ||||||||||||||||    
T  33786524 taaaaaaaaaaaaaaaatgcataacatccaccaccccatgatttccggcccgacagagatttt 33786586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 32000061 - 32000159
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||| ||||||    
T  32000061 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattcatttcat 32000159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 40273976 - 40273880
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||| ||||||    
T  40273976 aaaatgctagatatcaagaatgatttatcaagaaatattcaagaatgacatggcacaataatcacccttagatttcagtctcatttattcctttcat 40273880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 18404721 - 18404628
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||||||||||||   ||||||||||||||||||| ||| ||||||||| |   |||||||||||||| |||||||    
T  18404721 taaggaaaatgctagatatcaagaatgattttataagaaagatttaagaatgacatggcacaataatcacatttagatttcagtctcatttatt 18404628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 44690818 - 44690907
Alignment:
Q  52 aaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||||| ||| || |||||| | ||||||||| ||||||||||||||    
T  44690818 aaaatgttagatatcaataatgattttatcaagaaagattcaagaatgacatggcagaataatcacccttagattccagtcttatttatt 44690907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 20304923 - 20305014
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    |||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  20304923 aaggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttat 20305014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 9910086 - 9910176
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | ||||||||||| ||||||||||    
T  9910086 ggaaaatgttagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagacttatttatt 9910176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 33786696 - 33786623
Alignment:
Q  53 aaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | ||||| ||||    
T  33786696 aaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttaaattt 33786623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 40215257 - 40215168
Alignment:
Q  51 gaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  40215257 gaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 40215168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 10167679 - 10167579
Alignment:
Q  41 ttaatttaaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    |||||| ||||||||||||| |||| ||||||||||| || || ||| |||||||||| |||||  |||||||| | | |||||||||||||||||||||    
T  10167679 ttaattaaaggaaaatgttacatattaagaatgattttataaaaaaatatttaagaataatatgatacaataatcacctttagatttcagtcttatttat 10167580  T
Q  140 t 140  Q
    |    
T  10167579 t 10167579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 51737777 - 51737685
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  51737777 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 51737685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 3559887 - 3559797
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||||||| ||||||||| | | ||| |||||||||| |||||||    
T  3559887 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgatatgacacaataatcacctttatatttcagtctcatttatt 3559797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 27523047 - 27523141
Alignment:
Q  47 taaggaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| ||||||  |||| || | |||| | |||| ||||| |||||||||||||    
T  27523047 taaggaaaatgttatatatcaagaatgattttatcaagaaagattcaagaatcgtatggcagattaatcaccctttgattttagtcttatttatt 27523141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 37821629 - 37821719
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  37821629 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 37821719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 44094971 - 44094877
Alignment:
Q  46 ttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||| |||||||||||||| ||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  44094971 ttaaggaaaatgctagatatcaagaattattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 44094877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 19015684 - 19015584
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    |||||| | ||||||||| || ||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  19015684 attaatattaggaaaatgctacatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttat 19015585  T
Q  140 t 140  Q
    |    
T  19015584 t 19015584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 19722894 - 19722970
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||||||||||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | ||||||||    
T  19722894 ggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacctttagattt 19722970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 36966501 - 36966593
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||| | ||| ||||||||| | | |||||||||||||| |||||||    
T  36966501 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaataacatggcacaataatcacctttagatttcagtctcatttatt 36966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 41876235 - 41876327
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  41876235 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatagcacaataatcacctttagatttcagtctcatttatt 41876327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 25463946 - 25463856
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||| ||||| |||||||    
T  25463946 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttaagtctcatttatt 25463856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 25973677 - 25973587
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | ||| |||||||||| |||||||    
T  25973677 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttaaatttcagtctcatttatt 25973587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 40273861 - 40273816
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  40273861 tacataacacccaccaccccatgatttccggcccgacagagatttt 40273816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 6883757 - 6883667
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| || |||| | | | |||||||||||||| |||||||    
T  6883757 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcataatattcacctttagatttcagtctcatttatt 6883667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 52064364 - 52064422
Alignment:
Q  41 ttaatttaaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatga 99  Q
    |||||||||| |||||| |||||||||| |||||||| ||||||||||||| ||||||||    
T  52064364 ttaatttaag-aaaatgctagatatcaaaaatgattttatcaagaaagattcaagaatga 52064422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 32000173 - 32000218
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| || ||||| |||||||    
T  32000173 tacataacacccaccaccccatgatttccggctcgacatagatttt 32000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 36966614 - 36966659
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  36966614 tacataacacccaccaccccatgatttccggccagactgagatttt 36966659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 40273706 - 40273779
Alignment:
Q  54 aatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||| ||||||||||||| || ||| |||||||| ||| |||||||| |||||| |||||| | ||||||||||    
T  40273706 aatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacatgtcaaaataatcacccttagattt 40273779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 44094857 - 44094812
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  44094857 tacataacacccaccaccccatgatttccggccagactgagatttt 44094812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 51621085 - 51621057
Alignment:
Q  161 tacataacatccaccaccccatgatttcc 189  Q
    |||||||||||||||||||||||||||||    
T  51621085 tacataacatccaccaccccatgatttcc 51621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 22912852 - 22913005
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcatn 149  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||  | ||||     
T  22912852 ggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatttctctcat- 22912950  T
Q  150 nnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
               ||||||||||||||||||||||||||||  ||||||||||||||||    
T  22912951 --aaaaaaaaatacataacatccaccaccccatgatttctggcccgacagagatttt 22913005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 17545476 - 17545574
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttca 147  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||    
T  17545476 aggaaaatgctagatatcaagaatgatttatcaaaaaatatttaagaatgacatgacacaataatcatccttagatttcagtctcatttattcctttca 17545574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 3521793 - 3521892
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    ||||||||| |||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  3521793 attaattta-ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttat 3521891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 12614531 - 12614623
Alignment:
Q  49 aggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| ||||||||||| ||||||| ||||| |||||||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  12614531 aggaaaatgctagatatcaagtatgattttatcaaaaaagatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 12614623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 2477906 - 2477816
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   ||||||||| ||||||||| ||| |||||| || | | ||||||||||||||||||||||    
T  2477906 ggaaaatgctagatatcaagaatgattttataagaaagatctaagaatgacatggcacaatgatcacctttagatttcagtcttatttatt 2477816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 6043307 - 6043397
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  6043307 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 6043397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 8145643 - 8145553
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  8145643 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 8145553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 4892473 - 4892382
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  4892473 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 4892382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 37321587 - 37321678
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  37321587 aggaaaatgctagatatcaagaatgattttataagaaatattcaagaatgaaatggcacaataatcacctttagatttcagtctcatttatt 37321678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 33584124 - 33584214
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  33584124 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 33584214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 3363048 - 3362959
Alignment:
Q  51 gaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||  | | |||||||||||||| |||||||    
T  3363048 gaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataaccacctttagatttcagtctcatttatt 3362959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 25398510 - 25398418
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| || ||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  25398510 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaacaatgacatggcacaataatcacctttagatttcagtctcatttatt 25398418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 14138938 - 14138847
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| ||||||| |||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||| ||| |||||||    
T  14138938 aggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttatt 14138847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 12851069 - 12850982
Alignment:
Q  53 aaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||  | | |||||||||||||| |||||||    
T  12851069 aaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttatt 12850982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 38899520 - 38899611
Alignment:
Q  50 ggaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||| ||||| || ||| ||| |||||||| ||| ||||||||  | | |||||||||||||| |||||||    
T  38899520 ggaaaatgctagatatcaagaatgattttataaaaaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttatt 38899611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 17545594 - 17545636
Alignment:
Q  164 ataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  17545594 ataacacccaccaccccatgatttccggcccgacagagatttt 17545636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 3362937 - 3362892
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  3362937 tacataacacccaccaccccatgatttccggccagactgagatttt 3362892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 4433844 - 4433893
Alignment:
Q  91 taagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| ||| ||||||||| | | ||||||||||||||||||||||    
T  4433844 taagaatgacatggcacaataatcacctttagatttcagtcttatttatt 4433893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 7017650 - 7017751
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttc 146  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| || | | |||||| |||||||||||||||||| |||||||| ||||    
T  7017650 taaggaaaatgctagatatcaagaatgatttatcaagaaatatttaagaatgacattttataataatcatccttagatttcagtctcatttattcctttc 7017749  T
Q  147 at 148  Q
    ||    
T  7017750 at 7017751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 7022251 - 7022092
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttca 147  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |||||||| | |||||||||||   |||||||||||||||| |||||||| |||||    
T  7022251 aaggaaaatgctagatatcaacaatgatttatcaagaaagattcaagaatgacaagtcacaataatcgcccttagatttcagtctcatttattcctttca 7022152  T
Q  148 t-nnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    |             ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  7022151 taaaaaaaaaaaaatacataacacccaccaccccatgatttccggcccgacatagatttt 7022092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 31347569 - 31347659
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttattta 138  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||    
T  31347569 aaggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcattta 31347659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 37132477 - 37132566
Alignment:
Q  52 aaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| ||||||||||||||||||| ||||||||||||| | |||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  37132477 aaaatgctagatatcaagaatgattttatcaagaaagattcatgaatgacatgacacaataatcacccttagatttcagtcttatttatt 37132566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 3596836 - 3596926
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||||||| ||||||||| | | |||||||||||||| |||||||    
T  3596836 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgatatggcacaataatcacctttagatttcagtctcatttatt 3596926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 20091598 - 20091686
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  20091598 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 20091686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 34665649 - 34665561
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  34665649 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacccttagatttcagtctcatttatt 34665561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 32065017 - 32064926
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  32065017 aggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 32064926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 30834849 - 30834938
Alignment:
Q  49 aggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttattt 137  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| || |||||  | |||||||||||||| ||||||    
T  30834849 aggaaaatgatagatatcaagaatgattttatcaagaaagattaaagaatgacatgacagaataaccacccttagatttcagtgttattt 30834938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 3890412 - 3890500
Alignment:
Q  53 aaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || |||||| | | |||||||| | |||||||||||    
T  3890412 aaatgctagatatcaagaatgattttatcaagaaagattcaagaatgatatggcagaataatcaccattagattttaatcttatttatt 3890500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 1503637 - 1503728
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  1503637 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 1503728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 17841640 - 17841735
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||| |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  17841640 tttatggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 17841735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 26041907 - 26041998
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  26041907 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 26041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 37985850 - 37985941
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||  |||||||    
T  37985850 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtcccatttatt 37985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 40779923 - 40780014
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  40779923 aggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 40780014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 6108028 - 6108118
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  6108028 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 6108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 10044618 - 10044528
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||| ||| |||||||    
T  10044618 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcaatctcatttatt 10044528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 30055786 - 30055696
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| ||||||| |||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||| ||||| |||||||    
T  30055786 ggaaaatgctagatattaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagattttagtctcatttatt 30055696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 42754837 - 42754927
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||| |||  |||||||| | | |||||||||||||| |||||||    
T  42754837 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggtacaataatcacctttagatttcagtctcatttatt 42754927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 14129128 - 14129039
Alignment:
Q  51 gaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  14129128 gaaaatgctagatatcaagaatgattttataagaaatattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 14129039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 24844649 - 24844746
Alignment:
Q  44 atttaaggaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| || |||||| |  ||||||||| | ||||| |||||    
T  24844649 atttatggaaaatgttagatatcaataatgattttatcaagaaagatttaagaatggcatggcaaaataatcactcttagattttaatcttaattatt 24844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 38017201 - 38017112
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataa-ttatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   |||||||||| |||||||| ||| |||||||| ||| | |||||||||||||| |||||||    
T  38017201 aaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatttacctttagatttcagtctcatttatt 38017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 1645757 - 1645849
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   ||||||||   |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  1645757 aaggaaaatgctagatatcaagaatgattttataagaaagaaccaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 1645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 24211169 - 24211257
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  24211169 aaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 24211257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 15187831 - 15187740
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||||||  |||||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  15187831 aggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatagcacaataatcacctttagatttcagtctcatttatt 15187740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 41819590 - 41819653
Alignment:
Q  77 tatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  41819590 tatcaagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 41819653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 25581034 - 25581124
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  25581034 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacataacacaataatcacctttagatttcagtctcatttatt 25581124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 7017771 - 7017816
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  7017771 tacataacacccaccaccccatgatttccggcccgacagagatttt 7017816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 41819839 - 41819766
Alignment:
Q  54 aatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||||| |||||||||| ||||| |||||||| | ||||||||||||||| || |||||| | ||||||||||    
T  41819839 aatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatcacccttagattt 41819766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 32394114 - 32394037
Alignment:
Q  62 atatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||   || ||| |||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  32394114 atatcaagaatgattttataaaaaatatttaagaatgacatg-cacaataatcacctttagatttcagtctcatttatt 32394037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 15187572 - 15187637
Alignment:
Q  62 atatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    |||||||||| ||||| |||||||||  || |||||||||||| || |||||||| ||||||||||    
T  15187572 atatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataattacccttagattt 15187637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 27835293 - 27835338
Alignment:
Q  95 aatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| ||||||||| |||||||||||||| ||| |||||||    
T  27835293 aatgatatgacacaataatcatccttagatttcaatctcatttatt 27835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 31347688 - 31347733
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||    
T  31347688 tacataacacccactaccccatgatttctggcccgacagagatttt 31347733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 37985961 - 37986006
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  37985961 tacataacacccaccaccccatgatttccggccagactgagatttt 37986006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 39772608 - 39772677
Alignment:
Q  61 gatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagt 130  Q
    |||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | ||||||||||||    
T  39772608 gatatcaagaatgattttataagaaagatccaagaatgacatgacacaataatcacctttagatttcagt 39772677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 40780035 - 40780080
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||||||||||||||||||||||| ||| | | ||||||||    
T  40780035 tacataacatccaccaccccatgatttccggccaggctgagatttt 40780080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 30055675 - 30055647
Alignment:
Q  161 tacataacatccaccaccccatgatttcc 189  Q
    |||||||||||||||||||||||||||||    
T  30055675 tacataacatccaccaccccatgatttcc 30055647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 37219904 - 37219811
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||| |||||||||||||| |||||||||||    
T  37219904 aaggaaaatgttagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatcatccttagatttcaatcttatttatt 37219811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 24392942 - 24392846
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||  ||||||||| |||||||||||||||||| |||||||| ||||||    
T  24392942 aaaatgctagatatcaagaatgatttatcaagaaatatttaagaatgacatagcacaataatcatccttagatttcagtctcatttattcctttcat 24392846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 24128515 - 24128419
Alignment:
Q  44 atttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||||| | |||||||||||||| |||||||    
T  24128515 atttaagaaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataattacctttagatttcagtctcatttatt 24128419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 44893706 - 44893606
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    ||||||||| |||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  44893706 attaatttatggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttat 44893607  T
Q  140 t 140  Q
    |    
T  44893606 t 44893606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 21802114 - 21802205
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  21802114 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 21802205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 36073256 - 36073347
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| ||||||  || |||||||| |||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||    
T  36073256 ggaaaatgctagatactaaaaatgattttatcaagaaagatttaagaatgatatgccagaataattactcttagatttcagtcttatttatt 36073347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 53123306 - 53123211
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| ||| |||||||||||||| |||||||    
T  53123306 tttaaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttatt 53123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 46442122 - 46442024
Alignment:
Q  42 taatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  46442122 taatttaaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 46442024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 11314044 - 11314137
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| ||||||||||||||||||| ||||||||||||  |||||||| ||| ||||||||| | |||||||||  |||||||||||||    
T  11314044 aaggaaaatgctagatatcaagaatgattttatcaagaaagatgcaagaatgacatgacacaataatcacccttagattatagtcttatttatt 11314137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 17655699 - 17655610
Alignment:
Q  52 aaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||| ||| || |||||||| | |||||||||||||| |||||||    
T  17655699 aaaatgctagatattaagaatgattttatcaagaaagatttaagaatgacatgacataataattacctttagatttcagtctcatttatt 17655610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 42671939 - 42671851
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttattt 137  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| || |||||| || ||||||||| ||||| ||||    
T  42671939 ggaaaatgttagatatcaagaatgattttatcaagaaagattcaagaatgacatgacataataatcattcttagatttgagtctcattt 42671851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 4751730 - 4751627
Alignment:
Q  37 cttattaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatt 136  Q
    |||||| |||||||||||||| |||||||||||||| ||||   |||||| |||||||||||| ||| ||||||||  | | |||||||||||||| |||    
T  4751730 cttatttatttaaggaaaatgctagatatcaagaataattttataagaaaaatttaagaatgacatggcacaataaccacctttagatttcagtctcatt 4751631  T
Q  137 tatt 140  Q
    ||||    
T  4751630 tatt 4751627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 10442581 - 10442672
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  10442581 aggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 10442672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 44893007 - 44893098
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  44893007 aggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 44893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 49387677 - 49387772
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||||||||| |||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  49387677 tttaaggaaaatgttagatatcaaggatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 49387772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 2625110 - 2625017
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||||||||||   |||||||||| || ||||| ||  ||||||||| | | |||||||||||||| |||||||    
T  2625110 taaggaaaatgttagatatcaagaatgattttataagaaagattcaaaaatgacatagcacaataatcacctttagatttcagtctcatttatt 2625017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 9089147 - 9089050
Alignment:
Q  43 aatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||| | |||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| ||| |||||||||||||| |||||||    
T  9089147 aatttatgaaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttatt 9089050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 44744698 - 44744612
Alignment:
Q  51 gaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||| |||||||| |||||||    || |||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  44744698 gaaaatgttagatatcaaaaatgattttatcaaga----ttcaagaatgacatgactcaataattatccttagatttcagtcttatttatt 44744612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 22199531 - 22199439
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  22199531 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 22199439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 50156368 - 50156463
Alignment:
Q  44 atttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||| |||||||||||||||||||||||||||||   |||||| ||| |||||||| ||| || |||||| | |||||||||||||||| |||||||    
T  50156368 attttaggaaaatgttagatatcaagaatgattttataagaaaaattcaagaatgacatgacataataatca-ccttagatttcagtctcatttatt 50156463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 7744906 - 7744997
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||||||||||||||||||   |||||||||| |||||||| ||  ||||||||| | | |||||||||| ||| |||||||    
T  7744906 aggaaaatgttagatatcaagaatgattttataagaaagattcaagaatgacattgcacaataatcacctttagatttcaatctcatttatt 7744997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 33530479 - 33530569
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   || ||||||  |||||||| ||| ||||||||| | | ||||||||||||||||||||||    
T  33530479 ggaaaatgctagatatcaagaatgattttataaaaaagatccaagaatgacatggcacaataatcacctttagatttcagtcttatttatt 33530569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 36073619 - 36073529
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  36073619 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 36073529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26907684 - 26907635
Alignment:
Q  1 aaaattctactctactttattcaaaaagtagaattactta-ttaatttaa 49  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26907684 aaaattctactctactttattcaaaaagtagaattacttagttaatttaa 26907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 23964269 - 23964349
Alignment:
Q  60 agatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||   ||||||||||||||||||| ||| || |||||| ||| |||||||||| ||| |||||||    
T  23964269 agatatcaagaatgattttataagaaagatttaagaatgacatggcataataatcatctttagatttcaatctcatttatt 23964349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 31078612 - 31078704
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   || ||| ||| |||||||| ||| ||||||||| ||| |||||||||| ||| |||||||    
T  31078612 aaggaaaatgctagatatcaagaatgattttataaaaaaaattcaagaatgacatggcacaataatcatctttagatttcaatctcatttatt 31078704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 37934735 - 37934827
Alignment:
Q  49 aggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||| | || |||||| || |||||||||| || ||||||||| ||||||||| | |||||||||||| ||| |||||||    
T  37934735 aggaaaatgttagatattatgactgattttattaagaaagattcaataatgatatgacacaataatcacccttagatttcaatctcatttatt 37934827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 47290338 - 47290246
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| |||  |||||||| | | |||||||||||||| |||||||    
T  47290338 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggtacaataatcacctttagatttcagtctcatttatt 47290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 30563452 - 30563389
Alignment:
Q  77 tatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||||||| |||||||| ||| ||||||||| |  |||||||||||||||||||||||    
T  30563452 tatcaagaaagattcaagaatgacatgacacaataatcacacttagatttcagtcttatttatt 30563389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 36073224 - 36073131
Alignment:
Q  47 taaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||| |||||||||| ||||||||   |||||| ||| |||||||| ||| ||||||||  | | |||||||||||||| |||||||    
T  36073224 taaggaaaatgctagatatcaaaaatgattttataagaaaaattcaagaatgacatggcacaataaccacctttagatttcagtctcatttatt 36073131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 25063369 - 25063419
Alignment:
Q  50 ggaaaatgttagatatcaagaatga-tttatcaagaaagatttaagaatga 99  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  25063369 ggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatga 25063419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 24392826 - 24392781
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  24392826 tacataacacccatcaccccatgatttccggcccgacagagatttt 24392781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 24128398 - 24128353
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||||||||||||||||||||||| ||| | | ||||||||    
T  24128398 tacataacatccaccaccccatgatttccggccaggctgagatttt 24128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 36073106 - 36073061
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  36073106 tacataacacccaccaccccatgatttccggccagactgagatttt 36073061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 53123190 - 53123145
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  53123190 tacataacacccaccaccccatgatttccggccagactgagatttt 53123145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 53998979 - 53999020
Alignment:
Q  50 ggaaaatgttagatatcaagaatga-tttatcaagaaagatt 90  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  53998979 ggaaaatattagatatcaagaatgattttatcaagaaagatt 53999020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 49387794 - 49387822
Alignment:
Q  161 tacataacatccaccaccccatgatttcc 189  Q
    |||||||||||||||||||||||||||||    
T  49387794 tacataacatccaccaccccatgatttcc 49387822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 43331183 - 43331026
Alignment:
Q  49 aggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||  |||||||| | | |||||||||||||| |||||||| | ||||    
T  43331183 aggaaaatgctagatatcaagaatgatttatcaagaaagattcaagaatgacatggtacaataatcacctttagatttcagtctcatttattcctctcat 43331084  T
Q  149 nnnnnnnnnnnntacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
                ||||||||| ||||||||||||||||||| |||||||||| |||||    
T  43331083 aaaaaaaaaaaatacataacacccaccaccccatgatttccggcccgacagaaatttt 43331026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 9723677 - 9723585
Alignment:
Q  50 ggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattc 141  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| || |||||| | | |||||||||||||||||||||||    
T  9723677 ggaaaatgttagatatcaagaatgatttgatcaagaaatatttaagaatgacatgacagaataatcacctttagatttcagtcttatttattc 9723585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 21393483 - 21393578
Alignment:
Q  52 aaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| | ||||| |||||||||| |||||||| ||||||    
T  21393483 aaaatgctagatatcaagaatgatttatcaagaaa-attcaagaatgacatgacacaataatcacccttaaatttcagtctcatttattcctttcat 21393578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 22592985 - 22592890
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttaga--tttcagtcttatttatt 140  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| | |||||||  |||||||||||||||||    
T  22592985 aaggaaaatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatgacacaataatcacccttagatttttcagtcttatttatt 22592890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 9293370 - 9293460
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  9293370 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataatcacccttagatttcagtctcatttatt 9293460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 23267847 - 23267947
Alignment:
Q  40 attaatttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttat 139  Q
    |||| |||| |||||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| ||||||    
T  23267847 attattttagggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttat 23267946  T
Q  140 t 140  Q
    |    
T  23267947 t 23267947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 7475303 - 7475393
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||||||| || |||||| | | |||||||||||||| |||||||    
T  7475303 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgatatgacataataatcacctttagatttcagtctcatttatt 7475393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 10662158 - 10662068
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  10662158 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatgacacaataatcacctttagatttcagtctcatttatt 10662068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 33380477 - 33380387
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  33380477 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 33380387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 35161029 - 35160939
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  35161029 ggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 35160939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 13355120 - 13355028
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| |   |||||||||||||| |||||||    
T  13355120 aaggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgacatggcacaataatcacttttagatttcagtctcatttatt 13355028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 3989342 - 3989256
Alignment:
Q  54 aatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||| |||||||||||||||||||   |||||||||  |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  3989342 aatgctagatatcaagaatgattttataagaaagatccaagaatgacatgacacaataataacctttagatttcagtctcatttatt 3989256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 37335889 - 37335824
Alignment:
Q  75 tttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||| ||||| ||| |||| |||| | |||||||||||||||| |||||||    
T  37335889 tttatcaagaaagatttaataatgacatgacacagtaatcacccttagatttcagtctcatttatt 37335824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 16767285 - 16767347
Alignment:
Q  78 atcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||| |||||||| ||| ||||||||| |  ||||||||||||||| |||||||    
T  16767285 atcaagaaagattcaagaatgacatgacacaataatcactcttagatttcagtctcatttatt 16767347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 13354850 - 13354923
Alignment:
Q  54 aatgttagatatcaagaatgattt-atcaagaaagatttaagaatgatatgtcacaataattatccttagattt 126  Q
    ||||||| |||||||||| ||||| |||||||||  || |||||||||||| || |||||||| ||||||||||    
T  13354850 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataattacccttagattt 13354923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 21393594 - 21393639
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  21393594 tacataacacccaccaccccatgatttccggcccgacatagatttt 21393639  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 14941201 - 14941249
Alignment:
Q  92 aagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| ||| ||||||||| |||||||||||||| |||||||||||    
T  14941201 aagaatgacatgacacaataatcatccttagatttcaatcttatttatt 14941249  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 34320994 - 34321050
Alignment:
Q  92 aagaatgatatgtcacaataattatccttagatttcagtcttatttattcttttcat 148  Q
    |||||||| ||| ||||||||| | |||||||||||||||| |||||||| ||||||    
T  34320994 aagaatgacatggcacaataatcacccttagatttcagtctcatttattcctttcat 34321050  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 31174633 - 31174692
Alignment:
Q  53 aaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataa 112  Q
    ||||| |||||||||||||||||||   |||||||||| |||||||| ||| ||||||||    
T  31174633 aaatgctagatatcaagaatgattttataagaaagattcaagaatgacatgacacaataa 31174692  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 3989235 - 3989190
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  3989235 tacataacacccaccaccccatgatttccggccagactgagatttt 3989190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 23267968 - 23268013
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  23267968 tacataacacccaccaccccatgatttccggccagactgagatttt 23268013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 27847836 - 27847791
Alignment:
Q  45 tttaaggaaaatgttagatatcaagaatga-tttatcaagaaagat 89  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||    
T  27847836 tttaaggaaaatgctagatatcaagaataattttatcaagaaagat 27847791  T

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Target: scaffold0471 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 13118 - 13022
Alignment:
Q  44 atttaaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||| |||||| |||||||||||||||||||   |||||| |||||||||||| ||| ||||||||||| | |||||||||||||| |||||||    
T  13118 atttaagaaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgacatgacacaataattacctttagatttcagtctcatttatt 13022  T

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Target: scaffold0471; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 13001 - 12956
Alignment:
Q  161 tacataacatccaccaccccatgatttccagcccgacagagatttt 206  Q
    ||||||||||||||||||||||||||||| ||| | | ||||||||    
T  13001 tacataacatccaccaccccatgatttccggccaggctgagatttt 12956  T

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Target: scaffold0204 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 4666 - 4576
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||| |||||||||||||||| ||||||||| | | |||||||||||||| |||||||    
T  4666 ggaaaatgctagatatcaagaatgattttataagaaaaatttaagaatgatatggcacaataatcacctttagatttcagtctcatttatt 4576  T

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Target: scaffold0178 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 11891 - 11801
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    ||||||||||||||||||||||||||||   |||||| |||||||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  11891 ggaaaatgttagatatcaagaatgattttataagaaaaatttaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 11801  T

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Target: scaffold0228 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 16256 - 16164
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| ||| |||||||||||||| |||||||    
T  16256 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcatctttagatttcagtctcatttatt 16164  T

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Target: scaffold0228; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 26208 - 26116
Alignment:
Q  48 aaggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||||| |||||||||||||||||||   |||||| ||| |||||||| ||| ||||||||| | | |||||||||||||| |||||||    
T  26208 aaggaaaatgctagatatcaagaatgattttataagaaaaattcaagaatgacatggcacaataatcacctttagatttcagtctcatttatt 26116  T

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Target: scaffold0085 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 48119 - 48029
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||| |||||||| ||  ||||||||| ||| |||||||||||||| |||||||    
T  48119 ggaaaatgctagatatcaagaatgattttataagaaagattcaagaatgacatagcacaataatcatctttagatttcagtctcatttatt 48029  T

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Target: scaffold0096 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 41280 - 41190
Alignment:
Q  50 ggaaaatgttagatatcaagaatgatttatcaagaaagatttaagaatgatatgtcacaataattatccttagatttcagtcttatttatt 140  Q
    |||||||| |||||||||||||||||||   |||||||||  ||||||||||||  |||||||| | | |||||||||||||| |||||||    
T  41280 ggaaaatgctagatatcaagaatgattttataagaaagatccaagaatgatatggtacaataatcacctttagatttcagtctcatttatt 41190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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