View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_119 (Length: 203)
Name: NF1739_low_119
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 18853888 - 18853711
Alignment:
| Q |
14 |
cagatttaccttgtgcgtatgcacagaaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttc |
113 |
Q |
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| T |
18853888 |
cagatttaccttgtgcgtatgcacagaaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttc |
18853789 |
T |
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| Q |
114 |
ccataagtaagttgtttgtattgtgcaactgattttttgctaagatgaaaagcaatatgaataatttatctattttct |
191 |
Q |
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| T |
18853788 |
ccataagtaagttgtttgtattgtgcaactgattttttgctaagatgaaaagcaatatgaatgttttatctattttct |
18853711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 50015249 - 50015112
Alignment:
| Q |
14 |
cagatttaccttgtgcgtatgcacagaaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttc |
113 |
Q |
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||||||| |||||||| | || || |||||| ||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
50015249 |
cagatttgccttgtgcatgtgtgcacaaaggactgtcctttgatatatatctgttgtgttttgactgtgtagaaatgattgcaaaaattgtagtattttc |
50015150 |
T |
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| Q |
114 |
ccataagtaagttgtttgtattgtgcaactgatttttt |
151 |
Q |
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| T |
50015149 |
ccataagtaagttgtttgtatcatgccactgaattttt |
50015112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 18842737 - 18842693
Alignment:
| Q |
147 |
tttttgctaagatgaaaagcaatatgaataatttatctattttct |
191 |
Q |
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| T |
18842737 |
tttttgctaagatgaaaagcaatatgaatgttttatctattttct |
18842693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 44112306 - 44112169
Alignment:
| Q |
14 |
cagatttaccttgtgcgtatgcacagaaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttc |
113 |
Q |
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||||||| |||||||| | ||| || |||||| |||| ||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
44112306 |
cagatttgccttgtgcatgtgcgcacaaaggaccgtcctttgatatatatctgttgtgttttgactgtgtagaaatgattgcaaaaattgtagtattttt |
44112207 |
T |
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| Q |
114 |
ccataagtaagttgtttgtattgtgcaactgatttttt |
151 |
Q |
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| T |
44112206 |
tcataagtaagttgtttgtatcatgccactgaattttt |
44112169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 51301250 - 51301140
Alignment:
| Q |
40 |
aaaggatcgtctttttatatttatctgttgtgttttgactatgtagaactgattgcaaaaattgtagtattttcccataagtaagttgtttgtattgtgc |
139 |
Q |
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|||| |||||| ||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||| || |
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| T |
51301250 |
aaagcatcgtccttttatatttatctgctatgttttgactgtgtagaaatgattgcaaagattgtagtatttttccataagcaagttgtttgtattatgt |
51301151 |
T |
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| Q |
140 |
aactgattttt |
150 |
Q |
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| T |
51301150 |
cactgattttt |
51301140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 51301094 - 51301055
Alignment:
| Q |
150 |
ttgctaagatgaaaagcaatatgaataatttatctatttt |
189 |
Q |
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| T |
51301094 |
ttgctaagatgaaaagcaatatgaatgttttatctatttt |
51301055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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