View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_12 (Length: 519)

Name: NF1739_low_12
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_12
NF1739_low_12
[»] chr2 (13 HSPs)
chr2 (15-495)||(2846512-2846998)
chr2 (15-60)||(2847116-2847161)
chr2 (46-94)||(18570973-18571021)
chr2 (52-121)||(4229391-4229460)
chr2 (32-92)||(31026682-31026742)
chr2 (44-91)||(10535772-10535819)
chr2 (51-94)||(43996893-43996936)
chr2 (44-86)||(30563408-30563450)
chr2 (45-87)||(40681982-40682024)
chr2 (32-89)||(43586020-43586077)
chr2 (52-88)||(10254034-10254070)
chr2 (42-94)||(19613623-19613675)
chr2 (50-110)||(34006985-34007045)
[»] chr5 (14 HSPs)
chr5 (15-94)||(28296298-28296377)
chr5 (44-121)||(2577163-2577240)
chr5 (32-94)||(38749573-38749635)
chr5 (32-90)||(2039863-2039921)
chr5 (37-146)||(23220975-23221083)
chr5 (42-90)||(11596469-11596517)
chr5 (51-110)||(19737476-19737535)
chr5 (32-102)||(30080503-30080573)
chr5 (46-92)||(43208286-43208332)
chr5 (51-104)||(14818303-14818355)
chr5 (45-94)||(37472607-37472656)
chr5 (97-157)||(43554578-43554636)
chr5 (51-91)||(18607110-18607150)
chr5 (43-91)||(31264436-31264484)
[»] chr4 (16 HSPs)
chr4 (45-159)||(18513182-18513300)
chr4 (13-91)||(5654604-5654681)
chr4 (45-123)||(43299952-43300030)
chr4 (30-91)||(10546133-10546194)
chr4 (19-94)||(56049851-56049925)
chr4 (39-89)||(51673457-51673507)
chr4 (45-94)||(14465304-14465353)
chr4 (44-104)||(7012065-7012125)
chr4 (44-91)||(20743291-20743338)
chr4 (45-92)||(43300616-43300663)
chr4 (32-90)||(34589720-34589778)
chr4 (62-108)||(40224494-40224540)
chr4 (45-94)||(46180946-46180995)
chr4 (54-94)||(11110212-11110252)
chr4 (43-91)||(31243561-31243609)
chr4 (31-95)||(31552466-31552530)
[»] chr6 (7 HSPs)
chr6 (32-94)||(9024186-9024248)
chr6 (44-130)||(13689168-13689253)
chr6 (45-159)||(12235466-12235578)
chr6 (45-91)||(34446565-34446611)
chr6 (42-91)||(12086358-12086407)
chr6 (62-94)||(7942272-7942304)
chr6 (33-89)||(19369805-19369861)
[»] chr7 (8 HSPs)
chr7 (36-94)||(38134416-38134474)
chr7 (44-143)||(7133235-7133338)
chr7 (43-94)||(2525854-2525905)
chr7 (51-94)||(44172900-44172943)
chr7 (32-94)||(4909138-4909200)
chr7 (52-94)||(36314637-36314679)
chr7 (45-123)||(44020975-44021053)
chr7 (43-91)||(23930217-23930265)
[»] chr8 (13 HSPs)
chr8 (52-159)||(39820436-39820540)
chr8 (379-493)||(8707813-8707927)
chr8 (53-93)||(29198490-29198530)
chr8 (51-94)||(3508058-3508101)
chr8 (32-91)||(5307048-5307106)
chr8 (52-95)||(34201055-34201098)
chr8 (52-95)||(37225752-37225795)
chr8 (45-159)||(30067975-30068087)
chr8 (52-109)||(12985399-12985456)
chr8 (32-89)||(26915255-26915312)
chr8 (32-109)||(42874509-42874586)
chr8 (70-102)||(5138834-5138866)
chr8 (34-94)||(31236587-31236647)
[»] chr1 (11 HSPs)
chr1 (45-121)||(11412751-11412827)
chr1 (53-121)||(30847703-30847771)
chr1 (43-109)||(19637766-19637832)
chr1 (44-109)||(1864875-1864940)
chr1 (44-159)||(373046-373160)
chr1 (38-89)||(14332402-14332452)
chr1 (44-87)||(40747790-40747833)
chr1 (52-90)||(3921674-3921712)
chr1 (32-142)||(38075933-38076042)
chr1 (42-91)||(7988464-7988513)
chr1 (51-88)||(11571591-11571628)
[»] scaffold0022 (1 HSPs)
scaffold0022 (32-94)||(99880-99942)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-87)||(225285-225328)
[»] chr3 (10 HSPs)
chr3 (51-94)||(20691325-20691368)
chr3 (51-94)||(40150581-40150624)
chr3 (32-87)||(41319327-41319382)
chr3 (44-86)||(16789668-16789710)
chr3 (33-91)||(25074777-25074835)
chr3 (37-95)||(34409351-34409409)
chr3 (46-91)||(12704670-12704715)
chr3 (56-109)||(23271989-23272042)
chr3 (43-88)||(34189425-34189470)
chr3 (51-91)||(52369781-52369821)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Complemental strand, 2846998 - 2846512
Alignment:
Q  15 cacagacacaggacaacacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacg 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2846998 cacagacacaggacaacgcacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacg 2846899  T
Q  115 tgtgtccaacatcggggacacgcctaatccgagaagtttccgtgcatacaaatcaaaatacacttaataaatattcaagcatcacagttttccaaaatat 214  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2846898 cgtgtccaacatcggggacacgcctaatccgagaagtttccgtgcatacaaatcaaaatacacttaataaatattcaagcatcacagttttccaaaatat 2846799  T
Q  215 actatagtctaaactctacaatgttgataataaagcaacatg------taagcacaaaatcaagcaaccaattaaccatatatgcacaacagacactaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2846798 actatagtctaaactctacaatgttgataataaagcaacatgtactcttaagcacaaaatcaaacaaccaattaaccatatatgcacaacagacactaat 2846699  T
Q  309 gtcacagaaaatcttattcatactcaaaattaagagtaaataaacacagcaaattaagttcaaaccgttgtttaatgcaatccatgcagaaaaactcttt 408  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2846698 gtcacagaaaatctaattcatactcaaaattaagagtaaataaacacagcaaattaagttcaaaccgttgtttaatgcaatccatgcagaaaaactcttt 2846599  T
Q  409 ctggcagttgttacactttatcaaattcaaagaatcactactctgacaccaatgacacttcttcctcctacacttcttcaaaacctt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2846598 ctggcagttgttacactttatcaaattcaaagaatcactactctgacaccaatgacacttcttcctcctacacttcttcaaaacctt 2846512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 2847161 - 2847116
Alignment:
Q  15 cacagacacaggacaacacacggacaagtcgacacagataataatt 60  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  2847161 cacagacacaggacaacacacggacacgtcgacacagataataatt 2847116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 18570973 - 18571021
Alignment:
Q  46 acacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgt 18571021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 4229460 - 4229391
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtcc 121  Q
    |||||||||  ||| |||||||||||||| |||||||||||||  || ||||| | ||||||||||||||    
T  4229460 ataataatttaagagaatgacataattcagtgtaatcatatgtgtcgatgttgcaaaccgacgtgtgtcc 4229391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 31026682 - 31026742
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatat 92  Q
    ||||||| | ||||| || ||||||||||  ||| ||||||||||||||||||||||||||    
T  31026682 acacggatacgtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatat 31026742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 10535819 - 10535772
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||| |||||||||| |||| |||||||||||||| ||||||||||    
T  10535819 cgacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 43996893 - 43996936
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||    
T  43996893 gataataattagagagaatgacataattcaacgtaatcatatgt 43996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 30563408 - 30563450
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaa 86  Q
    |||||| |||||||||| |||| ||||||||||||||||||||    
T  30563408 cgacacggataataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 40681982 - 40682024
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaat 87  Q
    ||||| |||||||||| |||| |||||||||||||||||||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 43586077 - 43586020
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatca 89  Q
    |||| |||| ||| |||||||||| | || |||| |||||||||||||||||||||||    
T  43586077 acactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatca 43586020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 10254034 - 10254070
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatc 88  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  10254034 ataataattgtagaaaatgacataattcaatgtaatc 10254070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 19613675 - 19613623
Alignment:
Q  42 gtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||  ||||||||| |||| ||| ||||||||||||||||| ||||||    
T  19613675 gtcgacactcataataatttgagaaaataacataattcaatgtaatgatatgt 19613623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 34007045 - 34006985
Alignment:
Q  50 agataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacacc 110  Q
    ||||||||||| |||| | |||||||||||| |||||||||| ||  |||||| |||||||    
T  34007045 agataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacc 34006985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 28296298 - 28296377
Alignment:
Q  15 cacagacacaggacaacacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| ||||  ||| |||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  28296298 cacagacacaagacacgacatggacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgt 28296377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 2577240 - 2577163
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtcc 121  Q
    |||||| |||||||||| |||| |||||||||||| | ||||||||||||| ||||||| ||| ||||| ||||||||    
T  2577240 cgacaccgataataatttgagaaaatgacataatttagtgtaatcatatgttccggtgtcggataccgatgtgtgtcc 2577163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 38749635 - 38749573
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||| |||||||| |||||||||| || | ||||||||||||||||||||| ||||||    
T  38749635 acacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgt 38749573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 2039921 - 2039863
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcat 90  Q
    ||||||||| |||||||| | |||||||| |||| |||||||| |||||||||||||||    
T  2039921 acacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatcat 2039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 23220975 - 23221083
Alignment:
Q  37 gacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggggacacg 136  Q
    |||| |||||||| | |||||||| || | ||| |||||||| | ||| |||||||||  |||||||||||| | | | |||||||||| | ||||||||    
T  23220975 gacatgtcgacaccgctaataatttgataaaatcacataatttagtgttatcatatgtgtcggtgttggacatcaatgcgtgtccaaca-ctgggacacg 23221073  T
Q  137 cctaatccga 146  Q
    ||||||||||    
T  23221074 cctaatccga 23221083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 11596517 - 11596469
Alignment:
Q  42 gtcgacacagataataattggagacaatgacataattcaatgtaatcat 90  Q
    ||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  11596517 gtcgataccgataataatttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 19737535 - 19737476
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacacc 110  Q
    |||||||||| |||| ||| ||||||||||||| ||||||||||  ||||||| ||||||    
T  19737535 gataataatttgagaaaattacataattcaatgcaatcatatgtgtcggtgtttgacacc 19737476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 30080573 - 30080503
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgt 102  Q
    ||||||| | |||||||| ||||| | || |||| ||||||||||||||||||||||| | ||| ||||||    
T  30080573 acacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgt 30080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 43208332 - 43208286
Alignment:
Q  46 acacagataataattggagacaatgacataattcaatgtaatcatat 92  Q
    |||| |||| ||||| |||| ||||||||||||||||||||||||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatat 43208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 14818355 - 14818303
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttg 104  Q
    |||||||||| |||| |||||||||||||||||||| |||||||  ||||||||    
T  14818355 gataataatttgaga-aatgacataattcaatgtaaacatatgtgtcggtgttg 14818303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 37472656 - 37472607
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||| |||||||||| |||| ||||||||||||| || |||||||||||    
T  37472656 gacactgataataattcgagaaaatgacataattcgatataatcatatgt 37472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 43554578 - 43554636
Alignment:
Q  97 cggtgttggacaccgacgtgtgtccaacatcggggacacgcctaatccgagaagtttccgt 157  Q
    |||||| ||||||||||| |||||| |||   ||||||||||||||||||||||| |||||    
T  43554578 cggtgtcggacaccgacgcgtgtccgacac--gggacacgcctaatccgagaagtgtccgt 43554636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 18607150 - 18607110
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  18607150 gataataatttgagaaaataacataattcaatgtaatcata 18607110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 31264436 - 31264484
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    ||||||||  |||||||| |||| |||||||||||||| ||||||||||    
T  31264436 tcgacacaagtaataatttgagaaaatgacataattcagtgtaatcata 31264484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 18513300 - 18513182
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgtt-----ggacaccgacgtgtgtccaacatcggggacacgcct 139  Q
    ||||| |||||||||| |||| ||||||||||||||||||||||||||||  | |||||     |||||||||||||||||| ||| |  ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacaccgacgtgtgtccgaca-ccaggacacgcct 18513202  T
Q  140 aatccgagaagtttccgtgc 159  Q
    |||| ||| ||| |||||||    
T  18513201 aatctgaggagtgtccgtgc 18513182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 5654681 - 5654604
Alignment:
Q  13 agcacagacacaggacaacacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    ||||||||||| ||||||  ||| |||| |||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  5654681 agcacagacac-ggacaaagcacagacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatcata 5654604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 43300030 - 43299952
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaa 123  Q
    ||||| |||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||| |||  |||||||||||    
T  43300030 gacacggataataatttgagaaaattacataattcaatgtaatcatatctgccggtgttggaaaccatcgtgtgtccaa 43299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 10546133 - 10546194
Alignment:
Q  30 acacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||| |||| |||||||  |||||||||| |||| |||||||||||||||||||||||||    
T  10546133 acacacagacatgtcgacaatgataataatttgagaaaatgacataattcaatgtaatcata 10546194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 56049851 - 56049925
Alignment:
Q  19 gacacaggacaacacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||| |||||  |||||||||  ||||||| |||||||||| |||| ||||||||| ||||||||||||||||||    
T  56049851 gacaccggacacgacacggacacatcgacaccgataataatttgaga-aatgacatagttcaatgtaatcatatgt 56049925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 51673507 - 51673457
Alignment:
Q  39 caagtcgacacagataataattggagacaatgacataattcaatgtaatca 89  Q
    |||| |||||| ||||||||||||||| |||||||||||||| ||||||||    
T  51673507 caagccgacactgataataattggagaaaatgacataattcattgtaatca 51673457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 14465353 - 14465304
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||| |||||||||| |||| |||||||||||||||| |||||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgt 14465304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 7012065 - 7012125
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttg 104  Q
    |||||| |||||||||| |||| |||||||||||||| ||| |||||| ||| ||||||||    
T  7012065 cgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttg 7012125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 20743338 - 20743291
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||| |||||||||| |||| |||||||||||||| ||||||||||    
T  20743338 cgacacggataataatttgagaaaatgacataattcagtgtaatcata 20743291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 43300616 - 43300663
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatat 92  Q
    ||||| |||||||||| |||| ||| ||||||||||||||||||||||    
T  43300616 gacacggataataatttgagaaaattacataattcaatgtaatcatat 43300663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 34589778 - 34589720
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcat 90  Q
    |||||||||  | ||||| ||||| |||| |||| ||||||||||||||||||||||||    
T  34589778 acacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatcat 34589720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 40224540 - 40224494
Alignment:
Q  62 gagacaatgacataattcaatgtaatcatatgtaccggtgttggaca 108  Q
    |||| |||||||||||| |||||||||||||||  ||||||||||||    
T  40224540 gagaaaatgacataatttaatgtaatcatatgtgtcggtgttggaca 40224494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 46180995 - 46180946
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||| ||||||| |||| ||| |||||||||| |||||||||||||    
T  46180995 gacacagacaataatttgagaaaataacataattcagtgtaatcatatgt 46180946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 11110212 - 11110252
Alignment:
Q  54 aataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||| |||| ||||||||||||| ||||||||||||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgt 11110252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 31243609 - 31243561
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||  ||||||||| |||| |||||||||||||| ||||||||||    
T  31243609 tcgacacttataataatttgagaaaatgacataattcagtgtaatcata 31243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 31552530 - 31552466
Alignment:
Q  31 cacacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgta 95  Q
    |||||||| |||||||||   |||||||||  | | ||||||||||| |||||||||||||||||    
T  31552530 cacacggataagtcgacatcaataataatttcaaaaaatgacataatccaatgtaatcatatgta 31552466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 9024248 - 9024186
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||| ||||||||| || |||||| |||| ||||||||||||||||||||||||||||    
T  9024248 acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgt 9024186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 13689253 - 13689168
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggg 130  Q
    ||||||||||||||||| |||| ||| ||| | ||||||||||||||| ||| | |||| |||||| ||||||||||| ||||||||    
T  13689253 cgacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatc-gtgtcggacactgacgtgtgtcccacatcggg 13689168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 12235578 - 12235466
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggggacacgcctaatcc 144  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||| ||  | ||||  |||||||||||||||||  || | ||||||| ||||||||    
T  12235578 gacacggataataattagagaaaatgacataattcagtgtaatcataggtgtc-gtgtccgacaccgacgtgtgtccggca-ccgggacacccctaatcc 12235481  T
Q  145 gagaagtttccgtgc 159  Q
     | |||| |||||||    
T  12235480 aaaaagtgtccgtgc 12235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 34446565 - 34446611
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    ||||| |||||||||| |||| |||||||||||||| ||||||||||    
T  34446565 gacacggataataatttgagaaaatgacataattcagtgtaatcata 34446611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 12086407 - 12086358
Alignment:
Q  42 gtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||| |||||||||| |||| |||||||||||||| | ||||||||    
T  12086407 gtcgacacggataataatttgagataatgacataattcagtttaatcata 12086358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 7942272 - 7942304
Alignment:
Q  62 gagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||||||||||||||||||||| ||||    
T  7942272 gagacaatgacataattcaatgtaatcacatgt 7942304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 19369805 - 19369861
Alignment:
Q  33 cacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatca 89  Q
    |||||||| || ||||| ||||| | || |||| |||||||||||||||||||||||    
T  19369805 cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatca 19369861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 38134474 - 38134416
Alignment:
Q  36 ggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||| || ||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  38134474 ggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgt 38134416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 7133338 - 7133235
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcata-----tgtaccggtgttggacaccgacgtgtgtccaacatcggggacacgcc 138  Q
    |||||||||| |||||| |||| |||||||||||||| ||||||||||     |||  |||||| ||||||||||| |||||| ||| | ||||||| ||    
T  7133338 cgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgaca-ctgggacacacc 7133240  T
Q  139 taatc 143  Q
    |||||    
T  7133239 taatc 7133235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 2525905 - 2525854
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||| |||||||||| |||  |||||||||||||||| |||||||||||    
T  2525905 tcgacaccgataataatttgagcaaatgacataattcaatataatcatatgt 2525854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 44172943 - 44172900
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatcacatgt 44172900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 4909138 - 4909200
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||| || |||||  ||||||||| |||| ||| |||||||||| |||||||||||||    
T  4909138 acacggacaggttgacaccaataataatttgagaaaattacataattcattgtaatcatatgt 4909200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 36314679 - 36314637
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgt 36314637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 44020975 - 44021053
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaa 123  Q
    ||||| |||||||||| || | ||| |||||||||||||||| ||||| |  |||||||||| |||  |||||||||||    
T  44020975 gacacggataataatttgaaaaaattacataattcaatgtaaccatatctgtcggtgttggaaaccatcgtgtgtccaa 44021053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 23930217 - 23930265
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    ||||||| |||| ||||| |||| |||||||||||||| ||||||||||    
T  23930217 tcgacacggatagtaatttgagaaaatgacataattcagtgtaatcata 23930265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 39820436 - 39820540
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggggacacgcctaatccgagaagt 151  Q
    ||||||||| |||| ||||| |||||| | |||||||||| ||  || ||| ||||||||||| |||||| |||   |||||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcg-tgtcggacaccgacgcgtgtccgacac--gggacacgcctaatccgagaagt 39820532  T
Q  152 ttccgtgc 159  Q
     |||||||    
T  39820533 gtccgtgc 39820540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 493
Target Start/End: Complemental strand, 8707927 - 8707813
Alignment:
Q  379 tttaatgcaatccatgcagaaaaactctttctggcagttgttacactttatcaaattcaaagaatcactactctgacaccaatgacacttcttcctccta 478  Q
    ||||||||||| ||||| ||||||| ||||| | |||||   | ||||||| | |||| |||||||||||||||| |||||| || |||||||| ||       
T  8707927 tttaatgcaattcatgctgaaaaacactttccgacagttagaatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcc 8707828  T
Q  479 cacttcttcaaaacc 493  Q
    | |||||||||||||    
T  8707827 cccttcttcaaaacc 8707813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 29198530 - 29198490
Alignment:
Q  53 taataattggagacaatgacataattcaatgtaatcatatg 93  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatg 29198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 3508058 - 3508101
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgt 3508101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 5307048 - 5307106
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    ||||||||| |||||||| |||||||||| || | ||||||||||||||||| |||||||    
T  5307048 acacggacacgtcgacactgataataatttgaaa-aatgacataattcaatgaaatcata 5307106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 34201098 - 34201055
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgta 95  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaattatatgta 34201055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 37225795 - 37225752
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgta 95  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||    
T  37225795 ataataatttgagaaaataacataattcaatgtaatcatatgta 37225752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 30068087 - 30067975
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggggacacgcctaatcc 144  Q
    ||||| |||||||||| |||| |||||||||||||| | ||||| || || || | || ||| |||||||||||||| ||| | ||||||| ||||||||    
T  30068087 gacacggataataatttgagaaaatgacataattcagtataatcgtaggtgcc-gagtcggataccgacgtgtgtccgaca-ctgggacacacctaatcc 30067990  T
Q  145 gagaagtttccgtgc 159  Q
    ||  ||| |||||||    
T  30067989 gatgagtgtccgtgc 30067975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 12985399 - 12985456
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacac 109  Q
    ||||||||| |||| ||| |||||||||||||||||||||| |  |||||| ||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacac 12985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 26915312 - 26915255
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatca 89  Q
    ||||||||| |||||||| ||||| | || |||| |||||||||||| ||||||||||    
T  26915312 acacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatca 26915255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 42874509 - 42874586
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacac 109  Q
    ||||||||| |||||||| | ||| | || |||| ||||||||||||||||||||||| | ||  | |||||||||||    
T  42874509 acacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacac 42874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 5138866 - 5138834
Alignment:
Q  70 gacataattcaatgtaatcatatgtaccggtgt 102  Q
    ||||||||||||||||||||||||| |||||||    
T  5138866 gacataattcaatgtaatcatatgtgccggtgt 5138834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 31236647 - 31236587
Alignment:
Q  34 acggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||| | |||||| | |||||||| |||| ||| ||||||||||||||||| ||||||    
T  31236647 acggacacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgt 31236587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 11412827 - 11412751
Alignment:
Q  45 gacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtcc 121  Q
    ||||| |||||||||  |||| |||||||||||||||||| |||||| ||  |||||||||||||| || |||||||    
T  11412827 gacaccgataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtgttggacaccaacatgtgtcc 11412751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 30847771 - 30847703
Alignment:
Q  53 taataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtcc 121  Q
    |||||||| || | ||||||||||||||||||||||||||||  | |||||| ||||||| ||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttgaacaccgatgtgtgtcc 30847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 19637766 - 19637832
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacac 109  Q
    ||||||| ||||||||||  ||| |||||||| |||||||||||||||||||  |||||| ||||||    
T  19637766 tcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 1864940 - 1864875
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacac 109  Q
    |||||||| |||||||| |||| ||| |||||||||| |||||| ||||||  |||||||||||||    
T  1864940 cgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttggacac 1864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 373046 - 373160
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcggggacacgcctaatc 143  Q
    ||||| ||||||||||| |||| |||||||| ||| | | |||||||||||  |||||||| ||||||||  || |||||  || ||||||| | |||||    
T  373046 cgacaaagataataatttgagaaaatgacatgatttagtttaatcatatgtgtcggtgttgaacaccgactcgtatccaa-gtccgggacacacttaatc 373144  T
Q  144 cgagaagtttccgtgc 159  Q
     ||||||| |||||||    
T  373145 agagaagtgtccgtgc 373160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 14332402 - 14332452
Alignment:
Q  38 acaagtcgacacagataataattggagacaatgacataattcaatgtaatca 89  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||||||||||    
T  14332402 acaagtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatca 14332452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 40747833 - 40747790
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaat 87  Q
    |||||| |||||||||| |||| |||||||||||||||||||||    
T  40747833 cgacacggataataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 3921674 - 3921712
Alignment:
Q  52 ataataattggagacaatgacataattcaatgtaatcat 90  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaatcat 3921712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 38076042 - 38075933
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacaccgacgtgtgtccaacatcgggg 131  Q
    ||||||||| | |||||| | |||||||| |||  ||| |||||| ||| |||||||||||||  |||||| ||||| ||| ||||| || ||| | |||    
T  38076042 acacggacacgacgacactgctaataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgtcggacatcgatgtgtgaccgaca-ccggg 38075944  T
Q  132 acacgcctaat 142  Q
    |||||||||||    
T  38075943 acacgcctaat 38075933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 7988513 - 7988464
Alignment:
Q  42 gtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||| ||||||||||  ||| | |||||||||||||||||||||||    
T  7988513 gtcgacactgataataatttaagaaagtgacataattcaatgtaatcata 7988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 11571591 - 11571628
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatc 88  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaatc 11571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 99880 - 99942
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    ||||||||| |||||||| ||||||||||  ||| ||| ||||||||||||||||| ||||||    
T  99880 acacggacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgt 99942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 225328 - 225285
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaat 87  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||    
T  225328 cgacacagataataatttgagaaaatgacataatacaatgtaat 225285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 20691325 - 20691368
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| |||| |||||||||||||| |||||||||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgt 20691368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 40150624 - 40150581
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcatatgt 94  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgt 40150581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 41319382 - 41319327
Alignment:
Q  32 acacggacaagtcgacacagataataattggagacaatgacataattcaatgtaat 87  Q
    ||||||||| ||||||||  ||||||||| || | |||||||||||||||||||||    
T  41319382 acacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 16789710 - 16789668
Alignment:
Q  44 cgacacagataataattggagacaatgacataattcaatgtaa 86  Q
    ||||||||||||||||| |||| |||||||||||||| |||||    
T  16789710 cgacacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 25074777 - 25074835
Alignment:
Q  33 cacggacaagtcgacacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||| | |||||| |||||||||| |||| |||||||||||| | ||||||||||    
T  25074777 cacggacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcata 25074835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 34409409 - 34409351
Alignment:
Q  37 gacaagtcgacacagataataattggagacaatgacataattcaatgtaatcatatgta 95  Q
    |||| ||| |||| ||||||| || |||| ||||||||||||||||||||||| |||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcacatgta 34409351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 12704715 - 12704670
Alignment:
Q  46 acacagataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||| |||||||||| || | |||||||||||||||||||||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcata 12704670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 23272042 - 23271989
Alignment:
Q  56 taattggagacaatgacataattcaatgtaatcatatgtaccggtgttggacac 109  Q
    ||||| |||| | |||||||||| |||||||||||||||  |||||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgttggacac 23271989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 34189425 - 34189470
Alignment:
Q  43 tcgacacagataataattggagacaatgacataattcaatgtaatc 88  Q
    |||||||||||||||||| |||| ||||||||| |||| |||||||    
T  34189425 tcgacacagataataatttgagaaaatgacatatttcagtgtaatc 34189470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 52369781 - 52369821
Alignment:
Q  51 gataataattggagacaatgacataattcaatgtaatcata 91  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaatcata 52369821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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