View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_121 (Length: 202)
Name: NF1739_low_121
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_121 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 3731487 - 3731621
Alignment:
| Q |
52 |
atatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcag |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731487 |
atatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcag |
3731586 |
T |
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| Q |
152 |
gctttgagaaattagacattccctagaagaataat |
186 |
Q |
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| T |
3731587 |
gctttgagaaattagacattccctagaagaataat |
3731621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 11683805 - 11683935
Alignment:
| Q |
56 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctt |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11683805 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgcaggctc |
11683904 |
T |
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| Q |
156 |
tgagaaattagacattccctagaagaataat |
186 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
11683905 |
tgagaaattagacattccctagaagaataat |
11683935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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