View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_low_15 (Length: 506)
Name: NF1739_low_15
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 335
Target Start/End: Complemental strand, 42306589 - 42306280
Alignment:
| Q |
27 |
ctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctggctgaaaagtatg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42306589 |
ctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctggctgaagagtatg |
42306490 |
T |
|
| Q |
127 |
atagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctg-tgctggtcaaaatcaatacagttt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42306489 |
atagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctgttgctggtcaaaatcaatacagttt |
42306390 |
T |
|
| Q |
226 |
caaatacattacattttcatagtattgatcataattattcatggcaaatttttaaggataaaaccacgtcggttcactgtggacagtgcattttgatgtg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
42306389 |
caaatacattacattttcatagtattgatcataattattcatggcaaatttttaaggataaaaccacatcggttcacagtggacggtgcattttgatgtg |
42306290 |
T |
|
| Q |
326 |
ttttatttta |
335 |
Q |
| |
|
|||||||||| |
|
|
| T |
42306289 |
ttttatttta |
42306280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 327 - 494
Target Start/End: Complemental strand, 42305904 - 42305737
Alignment:
| Q |
327 |
tttattttattgttacactctgagtaatttgtttcttctagatttgtactcccagaaaccaagactgagaatgcagtatttcttctgttttgtttctaag |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42305904 |
tttattttattgttacactctgagtaatttgtttcttctagatttgtactcccagaaaccaagactgagaatgcagtatttcttctgttttgtttctaag |
42305805 |
T |
|
| Q |
427 |
cacatatgatatgggaagaagtccccgctctgaaaacaactcaaatcaatcatctaaacgtggaaact |
494 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42305804 |
cacctatgatatgggaagaagtcccccctctgaaaacaactcaaatcaatcatctaaacgtggaaact |
42305737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University