View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_17 (Length: 493)
Name: NF1739_low_17
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 29434455 - 29433969
Alignment:
| Q |
1 |
aatcctgatataaatgcaccacaggcaccacgagccaagatggaagtgtagccgtagccaacatcaaaatagatggttccaacacatatagatacaatga |
100 |
Q |
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||||||| || |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29434455 |
aatcctgttacaaatgcaccacaggcaccgcgagccaagatggaagtatagctatagccaacatcaaaatagagagttccaacacatatagatacaatga |
29434356 |
T |
|
| Q |
101 |
tatagatcataatcctcagccagtagtaaccaacatctctacacatgttcacaaatgatctccttgtcagtgttttgagttgcttccaccaactagcttg |
200 |
Q |
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| | || ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
29434355 |
tgttaattataattctcaaccagtagtaaccaatatctctacacatgttcacaaatgatctcctcgtcagtgtagagagttgcttccaccaactagcttg |
29434256 |
T |
|
| Q |
201 |
gcttccatagtttgtctcagtttcaatcccttcctgtaatacatttatcattaactaaatcaagattatgaagtaccgacacggacaccggatacgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29434255 |
gcttccatagtttgtctcagtttcaatcccttcctgtaatacatttatcattaactaaatcaagattatgaagtactgacacggacaccggatacgatac |
29434156 |
T |
|
| Q |
301 |
tggcacagaaaaagaatatcct-aggatttcagctcggcatagatatcagttgaattatatgtaatgaagtgtatagctaaatataaatgcttacattgg |
399 |
Q |
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| T |
29434155 |
tggcacagaaaaagaatatcctaaggatttcagctcggcatagatatcagttgaattatatgtaatgaagtgtatagctaaatataaatgcttacattgg |
29434056 |
T |
|
| Q |
400 |
ttgattgttcttgaatattgtattttacccttctggcgtacgttgaacgcttaaatctctcaactagcattgacttaatctgtgctg |
486 |
Q |
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| T |
29434055 |
ttgattgttcttgaatattgtattttacccttctggcgtacgttgaacgcttaaatctctcaactagcattgacttaatctgtgctg |
29433969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 29467376 - 29466890
Alignment:
| Q |
1 |
aatcctgatataaatgcaccacaggcaccacgagccaagatggaagtgtagccgtagccaacatcaaaatagatggttccaacacatatagatacaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29467376 |
aatcctgatataaatgcaccacaggcaccacgagccaagatggaagtgtagccgtagccaacatcaaaatagatggttccaacacatatagatacaatga |
29467277 |
T |
|
| Q |
101 |
tatagatcataatcctcagccagtagtaaccaacatctctacacatgttcacaaatgatctccttgtcagtgttttgagttgcttccaccaactagcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467276 |
tatagatcataatcctcagccagtagtaaccaacatctctgcacatgttcacaaatgatctccttgtcagtgttttgagttgcttccaccaactagcttg |
29467177 |
T |
|
| Q |
201 |
gcttccatagtttgtctcagtttcaatcccttcctgtaatacatttatcattaactaaatcaagattatgaagtaccgacacggacaccggatacgatac |
300 |
Q |
| |
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||||||| |||| |||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||| ||| |||| |
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| T |
29467176 |
gcttccaaggtttatctcagtttcaagcccttcctgtagtacatttatcattaacaaaatcaatattatgaatgactgacacggacaccggttactatac |
29467077 |
T |
|
| Q |
301 |
tggcacagaaaaagaatatcc-taggatttcagctcggcatagatatcagttgaattatatgtaatgaagtgtatagctaaatataaatgcttacattgg |
399 |
Q |
| |
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|| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467076 |
tgacacagaaaaagagtatccttaggatttcagctcggcatggatatcagttgaattatatgtaatgaagtgtatagctaaatataaatgcttacattgg |
29466977 |
T |
|
| Q |
400 |
ttgattgttcttgaatattgtattttacccttctggcgtacgttgaacgcttaaatctctcaactagcattgacttaatctgtgctg |
486 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29466976 |
ttgattgttcttgaatcttgtcttttacccttctggcatacgttgaacgcttaaatctctcaactagcattgacttaatttgtgctg |
29466890 |
T |
|
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