View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_21 (Length: 452)
Name: NF1739_low_21
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_21 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 32958348 - 32958783
Alignment:
| Q |
17 |
catcaacggtgagaattgacaagagattgttgcggaacttgttaatgaagtatatgttttcaaataaaattaagaaccatgatttgaaaacgaattcaaa |
116 |
Q |
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| T |
32958348 |
catcaacggtaagaattgacaagagattgttgcagaacatgttaatgaagtatatgttttcgaataaaattaagaaccatgatttgcaaacgaattcaaa |
32958447 |
T |
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| Q |
117 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
216 |
Q |
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| T |
32958448 |
acgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggtt |
32958547 |
T |
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| Q |
217 |
gcagattggaatacgagtgaatgagattgttgaatacggatggtacgagtaaggatggtggtcgagatggttgtggtggtttgtttagagtaaataacgg |
316 |
Q |
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| T |
32958548 |
gcagattggaatacgagtgaatgagattgttgaatacggatggtacgagtaaggatggtggtcgagatgtttgtggtggtttgtttagagtaaataacgg |
32958647 |
T |
|
| Q |
317 |
taagtgcaggaaagcacataaaaactgtcatgaccgaattccaatgcatcattagcaccaacagaaaataaatctctaagcctatgtacacaccaactcg |
416 |
Q |
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| T |
32958648 |
taagtgcaagaaagcacataaaaactgtcatgaccgaattccaatacatcattagcaccaaaagaaaataaatctctaagcctatgtacacaccagctcg |
32958747 |
T |
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| Q |
417 |
cagaaaccataagccaaactagcagtcagaacagcc |
452 |
Q |
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| T |
32958748 |
cagaaaccataagccaaactagcagtcacaacagcc |
32958783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 450
Target Start/End: Complemental strand, 29143007 - 29142961
Alignment:
| Q |
404 |
acacaccaactcgcagaaaccataagccaaactagcagtcagaacag |
450 |
Q |
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| T |
29143007 |
acacaccagctcgcagaaaccagaagccaaactagcagtcagaacag |
29142961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 94 - 253
Target Start/End: Complemental strand, 38630 - 38473
Alignment:
| Q |
94 |
catgatttgaaaacgaattcaaaacgcatgaaagatttaagatgaagatcagagaaggcaatatcatcatatttatatagttgttgttcgccttttcttt |
193 |
Q |
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||||||||| ||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| | |||| | |||||||| |||||| || |
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| T |
38630 |
catgatttgcaaatggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctata--gctgttgttcacctttttgtt |
38533 |
T |
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| Q |
194 |
tgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
253 |
Q |
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| T |
38532 |
tgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
38473 |
T |
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