View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_22 (Length: 433)
Name: NF1739_low_22
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 3322915 - 3322514
Alignment:
| Q |
9 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
108 |
Q |
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| T |
3322915 |
agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga |
3322816 |
T |
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| Q |
109 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322815 |
aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc |
3322716 |
T |
|
| Q |
209 |
attggagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatggcat |
308 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322715 |
attagagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatggcat |
3322616 |
T |
|
| Q |
309 |
gtgccttctgctttacctgattatgatgattttattgctcgtcttaaagctttcactggaagatcatagaaacttaggatttaaagacacattgttgtaa |
408 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322615 |
gtgccttctactttacctgattatgatgattttattgctcgtcttaaagctttcactggaagatcatagaaacttaggatttaaagacacattgttgtaa |
3322516 |
T |
|
| Q |
409 |
at |
410 |
Q |
| |
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|| |
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| T |
3322515 |
at |
3322514 |
T |
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