View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_23 (Length: 429)
Name: NF1739_low_23
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 37069125 - 37069350
Alignment:
| Q |
18 |
ctttggatcttacttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttctgaggttttcatggttctgtc |
117 |
Q |
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| T |
37069125 |
ctttggatcttacttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgttt--gaggttttcatggttctgtc |
37069222 |
T |
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| Q |
118 |
taagtttcaatcctcaaaattggacaagagttttgtgagtttatttaatctttctatacaaagtaaaatacaacgacttgccttgcgagtgttgcacacg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069223 |
taagtttcaatcctcaaaattggacaagagttttgtgagtttatttaatctttctatacaaagtaaaatacaacgacttgccttgcgagtgttgcacaca |
37069322 |
T |
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| Q |
218 |
gtatttatcgaaataaatagaaacaaac |
245 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
37069323 |
gtatttatggaaataaatagaaacaaac |
37069350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 37069401 - 37069521
Alignment:
| Q |
296 |
ggtcacaagaggaacataaatttaagtggggtttatttaatttaatgtagaatacccatctagttatgatacataatcaaatatctctgtagccattgca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069401 |
ggtcacaagaggaacataaatttaagtggggtttatttaatttaatgtagaatacccatctagttatgatacataatcaaatatctctgtagccattgca |
37069500 |
T |
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| Q |
396 |
gaggatccaatttactctgtg |
416 |
Q |
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||||||||||||||||||||| |
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| T |
37069501 |
gaggatccaatttactctgtg |
37069521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 37079154 - 37079256
Alignment:
| Q |
300 |
acaagaggaacataaat-ttaagtggggtttatttaatttaatgtagaatacccatctagttatgatacataatcaaatatctctgtagccattgcagag |
398 |
Q |
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||||||||||||||||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
37079154 |
acaagaggaacataaatatttagtggggtttatttaatttgatgtagaatccccacctagttatgatacttaatcaaatatatgtgtagccattgcagag |
37079253 |
T |
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| Q |
399 |
gat |
401 |
Q |
| |
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||| |
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| T |
37079254 |
gat |
37079256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 37065975 - 37066076
Alignment:
| Q |
311 |
ataaatttaagtggggtttatttaatttaatgtagaatacccatctagttatgatacataatcaaatatctctgtagccattgcagaggatccaatttac |
410 |
Q |
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||||||||||| || |||||||||||||||| ||||| |||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
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| T |
37065975 |
ataaatttaagctggttttatttaatttaatgcagaatccccacctagttatgatacataatcaaatatatgtgtagctattgcagaggatccaatttac |
37066074 |
T |
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| Q |
411 |
tc |
412 |
Q |
| |
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|| |
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| T |
37066075 |
tc |
37066076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 37064948 - 37065070
Alignment:
| Q |
18 |
ctttggatcttacttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttct-gaggttttcatggttctgt |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||| |||||||||||| | ||||||||||||| ||| |
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| T |
37064948 |
ctttggatcttacttattctatggatgagattgccaaaagatgtgttgatcatgacctcaattcaaggacaaatgtttctgggggttttcatggttatgt |
37065047 |
T |
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| Q |
117 |
ctaagtttcaatcctcaaaattg |
139 |
Q |
| |
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| | | |||||||||||| |||| |
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| T |
37065048 |
ccacgattcaatcctcaatattg |
37065070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 37062639 - 37062762
Alignment:
| Q |
18 |
ctttggatcttacttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttctgaggttttcatggttctgtc |
117 |
Q |
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||||||||||| | | ||| |||||||||||||| |||| |||| |||| ||| || ||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
37062639 |
ctttggatcttgcattttcaatggctgagattgctaaaagatgtgttgctcgtgatcttaattcaagaccaaatgtttctgaggttttcatgattctgtc |
37062738 |
T |
|
| Q |
118 |
taagtttcaatcctcaaaattgga |
141 |
Q |
| |
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|||| |||||||||| | |||||| |
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| T |
37062739 |
taagattcaatcctctacattgga |
37062762 |
T |
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