View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_27 (Length: 412)
Name: NF1739_low_27
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 7009634 - 7010028
Alignment:
| Q |
12 |
aattctagaagaagaaaaaatgtacaattgtataccaaagttgacataattaattaaaactgtcaaattttgttaaccctaataatgaattatatgtata |
111 |
Q |
| |
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|||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009634 |
aattctagaaaaaaaaaatatgtacaattgtataccaaagttgacataattaattaaaactgtcaaattttgttaaccctaataatgaattatatgtata |
7009733 |
T |
|
| Q |
112 |
atatttctaggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaatac |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
7009734 |
atatttctaggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacctcttactgaggaacaattggctaaggaagtagaatac |
7009833 |
T |
|
| Q |
212 |
cttatcaggaagggatgggttccttgtttggaatttgagcttgaggttaatctatttacattgcaatcctttctttcttcctttttaatttagagtttaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7009834 |
cttatcaggaagggatgggttccttgtttggaatttgagcttgaggttaatctatttacattgcaatcctttctttcttcctttttaaattagagtttaa |
7009933 |
T |
|
| Q |
312 |
gtattatacaacgtcggcgaaaaacttttttacacatacaaccaatcagatttttcatgacgccgcttttttgtatatacttattcctaaaatat |
406 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
7009934 |
gtattatacatcgtcggcgaaaaacttttttacacatacaaccaatcagatttttcatgacaccacttttttgtatatacttattcctaaaatat |
7010028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 47 - 365
Target Start/End: Original strand, 7006575 - 7006890
Alignment:
| Q |
47 |
caaagttgacataattaattaaaactgtcaaattttgttaaccctaataatgaattatatgtataatatttctaggtgtggccaccaattggcaagaaga |
146 |
Q |
| |
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||||||||||||||||| | | | |||||||||||||||||||||||| | |||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
7006575 |
caaagttgacataattattaatgattgtcaaattttgttaaccctaatactcaattttatgtataatatttataggtttggccaccaattggcaagaaga |
7006674 |
T |
|
| Q |
147 |
agtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
246 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7006675 |
agtttgaaacactttcataccttccaccccttactgaggatcaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
7006774 |
T |
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| Q |
247 |
tgagcttgaggttaatctatttacattgcaatcctttctttcttcctttttaatttagagtttaagtattatacaacgtcggcgaaaaacttttttacac |
346 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
7006775 |
tgagcttgaggttaatctatttacattgcaa--ctttttttctt-cttcttaatttagagtttaagtactatacactatcggtgaaaaacttttttacac |
7006871 |
T |
|
| Q |
347 |
atacaaccaatcagatttt |
365 |
Q |
| |
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|||||| |||| ||||||| |
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|
| T |
7006872 |
atacaatcaattagatttt |
7006890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 1358338 - 1358465
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| || ||||| ||||||||||| | |
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| T |
1358338 |
taggtgtggcctcctattggcaagaagaagtttgagacactttcataccttccaccattgaccagagaacaattggccaaagaagttgaataccttataa |
1358437 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatt |
246 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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| T |
1358438 |
ggaagggatgggttgcttgcttggaatt |
1358465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 1373725 - 1373856
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| | || ||||||||||| || ||||| ||||||||||| | |
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| T |
1373725 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1373824 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatttgag |
250 |
Q |
| |
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|||||||||||||| |||| |||||||||||| |
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| T |
1373825 |
ggaagggatgggttgcttgcttggaatttgag |
1373856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 1384086 - 1384213
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||||||||| | |
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| T |
1384086 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1384185 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatt |
246 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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|
| T |
1384186 |
ggaagggatgggttgcttgcttggaatt |
1384213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 1390191 - 1390318
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||||||||| | |
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|
| T |
1390191 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1390290 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatt |
246 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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| T |
1390291 |
ggaagggatgggttgcttgcttggaatt |
1390318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 1350432 - 1350559
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| | || ||||||||||| || ||||| ||||||||||| | |
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|
| T |
1350432 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1350531 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatt |
246 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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|
| T |
1350532 |
ggaagggatgggttgcttgcttggaatt |
1350559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 1394437 - 1394564
Alignment:
| Q |
119 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacccctcactgaggaacaattggctaaggaagtagaataccttatca |
218 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| | || ||||||||||| || ||||| ||||||||||| | |
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|
| T |
1394437 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1394536 |
T |
|
| Q |
219 |
ggaagggatgggttccttgtttggaatt |
246 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
|
|
| T |
1394537 |
ggaagggatgggttgcttgcttggaatt |
1394564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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