View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_28 (Length: 410)

Name: NF1739_low_28
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_28
NF1739_low_28
[»] chr5 (3 HSPs)
chr5 (134-293)||(41361370-41361529)
chr5 (65-249)||(34153968-34154151)
chr5 (113-293)||(41038062-41038243)
[»] chr4 (5 HSPs)
chr4 (111-217)||(6800276-6800384)
chr4 (194-282)||(6800186-6800273)
chr4 (100-182)||(6804677-6804761)
chr4 (166-293)||(1393007-1393132)
chr4 (233-282)||(6804628-6804676)
[»] chr2 (2 HSPs)
chr2 (100-292)||(13310453-13310646)
chr2 (100-204)||(10038612-10038712)
[»] chr3 (2 HSPs)
chr3 (165-216)||(53833602-53833653)
chr3 (112-143)||(53833564-53833595)
[»] chr1 (3 HSPs)
chr1 (65-144)||(21431081-21431156)
chr1 (175-243)||(2114887-2114955)
chr1 (175-232)||(21431011-21431068)
[»] scaffold0635 (1 HSPs)
scaffold0635 (100-204)||(8358-8458)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 41361370 - 41361529
Alignment:
Q  134 agtgttagtgagaagagctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccag 231  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41361370 agtgttagtgagaagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccag 41361469  T
Q  232 tgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactga 293  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  41361470 tgcgtttgcacgcctca-gccaaggaccgataagttcttcctttcttc-tttattttactga 41361529  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 34154151 - 34153968
Alignment:
Q  65 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg 163  Q
    ||||||||||||||||||||||||||  ||||||||  || |||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||    
T  34154151 caaataacaattaagttcccatgagc--atccaata--gtggttcctgtgcccttgctggttcacgtgcagtgttagtgaaaagtggctgttgtatcctg 34154056  T
Q  164 gag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcag 249  Q
    |||  ||||||  |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  34154055 gagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgcaattgcacgcctcag 34153968  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 293
Target Start/End: Complemental strand, 41038243 - 41038062
Alignment:
Q  113 tgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtggc 209  Q
    ||||||||||| || |||||||||||||| |||||| | |||||||||||||  |||||||||  ||||||||||||| |||| || |||||| |||||     
T  41038243 tgcccttgctagttaacgtgcagtgttagcgagaagtggctgttgtatcctgaagagcactagctttgaggccaactgtatcaggtcattgacatgtggt 41038144  T
Q  210 ggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactga 293  Q
    |||||||||||||||||| |  |||  |||||||||||| ||| | |||||||||  |||| | |||||| |||||||||||||    
T  41038143 ggcgaaatgctcttaagctcgatgcaattgcacgcctca-gccaacgaccgataaactctttccttcttc-tttattttactga 41038062  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 6800384 - 6800276
Alignment:
Q  111 tgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtgg 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  6800384 tgtgcccttgctatttcacgtgcagtgttagtgaggagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtgg 6800285  T
Q  209 cggcgaaat 217  Q
    |||||||||    
T  6800284 cggcgaaat 6800276  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 6800273 - 6800186
Alignment:
Q  194 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6800273 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctca-gccaaggaccgataagttcttcctttcttcttt 6800186  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 6804761 - 6804677
Alignment:
Q  100 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggcc 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||    
T  6804761 atagttgttcccgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtattctggagagcactaatcttgaggcc 6804677  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 1393132 - 1393007
Alignment:
Q  166 gcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataag 265  Q
    |||||||  |||||||||||||||| | ||||||||| ||||| |||||||||||||||| || |||   ||||||||| ||| | | | || |||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaaacctagtatatttgcacgcttca-gtcaacgagcgataag 1393034  T
Q  266 ttcttcctttcttcttttattttactga 293  Q
    |||||| ||||||| |||||||||||||    
T  1393033 ttcttcatttcttc-tttattttactga 1393007  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 6804676 - 6804628
Alignment:
Q  233 gcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttt 282  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  6804676 gcgtttgcacgcctcag-ccaaggaccgataagttcttcctttcttcttt 6804628  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 13310646 - 13310453
Alignment:
Q  100 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtg 196  Q
    ||||| |||| ||||||||| ||| |||||||| ||||||||||||| | | ||||| |||||| |||  | ||||  |||||||||||||||||| |||    
T  13310646 atagtggttcatgtgcccttactaattcacgtgtagtgttagtgagaggtggctgttttatcctagagagcgctagctttgaggccaactgcatcaggtg 13310547  T
Q  197 attgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactg 292  Q
    |||||||||||| || |||||||||||||||||| | | |||||| ||||||  || | ||||||||| |||||| | ||||| ||||||||||||    
T  13310546 attgacctgtggtggtgaaatgctcttaagcccaatacatttgcatgcctca-tccaacgaccgataaattcttcatctcttc-tttattttactg 13310453  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 10038612 - 10038712
Alignment:
Q  100 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 197  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  10038612 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 10038705  T
Q  198 ttgacct 204  Q
    |||||||    
T  10038706 ttgacct 10038712  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 53833602 - 53833653
Alignment:
Q  165 agcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaa 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaa 53833653  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 53833564 - 53833595
Alignment:
Q  112 gtgcccttgctatttcacgtgcagtgttagtg 143  Q
    ||||||||||||||||||||||||||||||||    
T  53833564 gtgcccttgctatttcacgtgcagtgttagtg 53833595  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 21431156 - 21431081
Alignment:
Q  65 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtga 144  Q
    ||||||||||||||||||||||||||  |||||| |  || |||||||||||||||||| ||||| | ||||||||||||    
T  21431156 caaataacaattaagttcccatgagc--atccaaga--gtggttcctgtgcccttgctagttcacatacagtgttagtga 21431081  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 2114955 - 2114887
Alignment:
Q  175 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacg 243  Q
    |||||| ||||||||||| | ||||||| | || |||||||||||||||||||||| || |||||||||    
T  2114955 ttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagcccaatgtgtttgcacg 2114887  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 21431068 - 21431011
Alignment:
Q  175 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagt 232  Q
    |||||||||||||||||| || |||||||||||  | ||||||||||||||| |||||    
T  21431068 ttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagt 21431011  T

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Target: scaffold0635 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 8458 - 8358
Alignment:
Q  100 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 197  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  8458 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 8365  T
Q  198 ttgacct 204  Q
    |||||||    
T  8364 ttgacct 8358  T

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