View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_29 (Length: 408)
Name: NF1739_low_29
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_29 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 204 - 391
Target Start/End: Original strand, 11991208 - 11991396
Alignment:
| Q |
204 |
ccttagtagctgaaaccacggaactgcgttggtgcttgttgcaggcagaacataaa-aactcaagaatctaatcatagagatggatgcagaaa-cagtag |
301 |
Q |
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| T |
11991208 |
ccttagtagctgaaaccatgggactgcggtggtgcttgttgtgggcagaacatcgtcaactcaagaatctaatcatagagatggatgctgaaatcagtag |
11991307 |
T |
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| Q |
302 |
taaggtgtgtacacgatgctgcaaaacctgatgcaattgatgaattcaatcatagactgcatagaagttcttgcaaggctagacaatact |
391 |
Q |
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| T |
11991308 |
taaggtgtgtacatggtgctgcaaaacctgatgcaactgatgaatt-aatcatagactgcatagaagttcttgcaaggctagagaatact |
11991396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 12021402 - 12021576
Alignment:
| Q |
201 |
cctccttagtagctgaaaccacggaactgcgttggtgcttgttgcaggcagaacataaaaactcaagaatctaatcatagagatggatgcagaaacagta |
300 |
Q |
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| T |
12021402 |
cctccttagtagctgaaaccatgggactgcggtggtgcttgttgcgggcagaacatcaa--ctcaaaaatctaatcatagagatggatgctgaaacaata |
12021499 |
T |
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| Q |
301 |
gtaaggtgtgtacacgatgctgcaaaacctgatgcaattgatgaattcaatcatagactgcatagaagttcttgcaag |
378 |
Q |
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| T |
12021500 |
gtaaggtgtgtacgtggtgctgcaaaacttgctgcaattgatgaatt-aatcatagattgcatagaagttcttgcaag |
12021576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 12021294 - 12021349
Alignment:
| Q |
129 |
ttttataaagatcaatgtagatgcaggctgtttctctaatggtaatacatgatggg |
184 |
Q |
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| T |
12021294 |
ttttataaagatgaatggtgatgcaggctgtttctctaatggtaatacaggatggg |
12021349 |
T |
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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 62568 - 62653
Alignment:
| Q |
260 |
aactcaagaatctaatcatagag-atggatgcagaaacagtagtaaggtgtgtacacgatgctgcaaaacctgatgcaattgatga |
344 |
Q |
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| T |
62568 |
aactcaagaacctaatcatagatcatggatgctgaaacagtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatga |
62653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 3414267 - 3414182
Alignment:
| Q |
260 |
aactcaagaatctaatcatagag-atggatgcagaaacagtagtaaggtgtgtacacgatgctgcaaaacctgatgcaattgatga |
344 |
Q |
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| T |
3414267 |
aactcaagaacctaatcatagatcatggatgctgaaacagtagttaggtgtgtgtatggtgctgcaaaacctgttgcaattgatga |
3414182 |
T |
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