View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_30 (Length: 404)
Name: NF1739_low_30
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_30 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 99 - 404
Target Start/End: Complemental strand, 26428517 - 26428200
Alignment:
| Q |
99 |
tataatggctgaatagatcataaaccacttttcaatgctaaaatacttgaataattcaagctcataattaattaattaattaat------------atac |
186 |
Q |
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| T |
26428517 |
tataatggctgaatagatcataaaccacttttcaatgctaaaatacttgaataattcaagctcataattaattaattaattaattaattaattaatatac |
26428418 |
T |
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| Q |
187 |
aaaaataagaaagagaaatgcataggtattatgtaactgcctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaat |
286 |
Q |
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| T |
26428417 |
aaaaataagaaagagaaatgcataggtattatgtaactgcctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaat |
26428318 |
T |
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| Q |
287 |
cagttttatatcatagctgtactctcaacaacaacactgtactttacacttctttttctcatttctctctcaaaataaagtcattcgtagtcnnnnnnna |
386 |
Q |
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| T |
26428317 |
cagttttatatcatagctgtactctcaacaacaacactgtactttacacttctttttctcatttctctctcaaaataaagtcattcgtagtcttttttta |
26428218 |
T |
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| Q |
387 |
cccttcaatctctctctc |
404 |
Q |
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| T |
26428217 |
cccttcaatctctctctc |
26428200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 26428606 - 26428553
Alignment:
| Q |
15 |
acaaagcacctagacttttgttggccgctaaaagatactccaaaacaactatat |
68 |
Q |
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| T |
26428606 |
acaaagcacctagacttttgttggccgctaaaagatactccaaaacaactatat |
26428553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 404
Target Start/End: Original strand, 28008623 - 28008749
Alignment:
| Q |
280 |
atgaaatcagttttatat--catagctgtactctcaacaacaacactgtacttt-acacttctttttctcatttctctctcaaaataaagtcattcgtag |
376 |
Q |
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| T |
28008623 |
atgaaatcagttttatatatcatagctgtattctct-caacaacactctacttttacacttctttttctcatttctctctcaaaataaagtcatacgcag |
28008721 |
T |
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| Q |
377 |
tcnnnnnnnacccttcaatctctctctc |
404 |
Q |
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| T |
28008722 |
tctttttttccccttcaatctctctctc |
28008749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 28008527 - 28008623
Alignment:
| Q |
163 |
taattaattaattaat-taatatacaaaaataagaaagagaaatgcataggtattatgtaactgcctcaaacttctccttaattttctcaacccacaa |
259 |
Q |
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| T |
28008527 |
taattaattaattaatgttaaaaacaaaaaaaaaaaagagaaatgcataggtattg-gtaactgcctccaacttcccctgaattttctgaacccacaa |
28008623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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