View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_31 (Length: 404)
Name: NF1739_low_31
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 80 - 390
Target Start/End: Complemental strand, 41795351 - 41795044
Alignment:
| Q |
80 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcactgtgttcatctgcgtcattagttctcatctcaacttctctctcca |
179 |
Q |
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| T |
41795351 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcattgtgttcatctgcttcattagttctcatctcaacttctctctcca |
41795252 |
T |
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| Q |
180 |
acaatggctcgttcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcatcatcatcact |
279 |
Q |
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| T |
41795251 |
acaatggctcattcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcatc---atcact |
41795155 |
T |
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| Q |
280 |
agaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatactgtgagtgtagagttga |
379 |
Q |
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| T |
41795154 |
agaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgttgttcttgtctatattgtgagtgtagagttga |
41795055 |
T |
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| Q |
380 |
gaaggaaaagt |
390 |
Q |
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| T |
41795054 |
gaaggaaaagt |
41795044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 41760314 - 41760198
Alignment:
| Q |
268 |
atcatcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatactgtga |
367 |
Q |
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| T |
41760314 |
atcatcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgctattcttgtctatgttgtga |
41760215 |
T |
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| Q |
368 |
gtgtagagttgagaagg |
384 |
Q |
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| T |
41760214 |
gtgtagagttgaaaagg |
41760198 |
T |
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