View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_32 (Length: 403)
Name: NF1739_low_32
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 29197964 - 29198097
Alignment:
| Q |
123 |
ctctaatttatttgacttgtgaagagccaaccatgtatggctctatttataatggagtgcaataagggctataagggtcttgtttttcaattcttaggag |
222 |
Q |
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| T |
29197964 |
ctctaatttatttgacttgtgaagagccaaccatgtctggctctatttataatggagtgcaataagggctataagggtcttgtttttcaattcataggag |
29198063 |
T |
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| Q |
223 |
gtataccacataaatattataaagtagaatatgataat |
260 |
Q |
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| T |
29198064 |
gtataccac----atattataaagtagaatatgataat |
29198097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 29197832 - 29197942
Alignment:
| Q |
16 |
aggattttgaatcaaaacgagcatcaatagttgcaatgaagcttaagaggaaaagcaacataactaactttatcattgccttcttgttcatcaagcccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
29197832 |
aggattttgaatcaaaacgagcatcaatagttgcaatgaagcttaagaggaaaatcaacatagctaactttatcattgtcttcttgttcatcaagcccat |
29197931 |
T |
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| Q |
116 |
tattaccctct |
126 |
Q |
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|||||| |||| |
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| T |
29197932 |
tattactctct |
29197942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 29198191 - 29198233
Alignment:
| Q |
350 |
cgtagccgacttctgttgtcggattatggagaatcttattcat |
392 |
Q |
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| T |
29198191 |
cgtagccgacttctgttgtcggattatggagaatcttattcat |
29198233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 29202445 - 29202512
Alignment:
| Q |
123 |
ctctaatttatttgacttgtgaagagccaaccatgtatggctctatttataatggagtgcaataaggg |
190 |
Q |
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||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
29202445 |
ctctaatttctttgctttgtgaaaagccaatcatgtatggctctatttataatggagtgtgataaggg |
29202512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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