View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_34 (Length: 381)
Name: NF1739_low_34
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 17561214 - 17561416
Alignment:
| Q |
24 |
cggtggaagtatcacaaccaaagttgaattggtaataggcatgaaacctggaacagccgaataaatctttttgaaaataaccaaattttggagttatttc |
123 |
Q |
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| T |
17561214 |
cggtggaagtatcacaaccaaagttgaattggtaataggcatgaaacctagaatagccgaataaatcttcttgaaaataaccaaattttggagttatttc |
17561313 |
T |
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| Q |
124 |
ttttgtggctgggttcaataaacggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaagaaccaatt |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17561314 |
ttttgtggctgggttccataaacggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaaggaccaatt |
17561413 |
T |
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| Q |
224 |
ata |
226 |
Q |
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||| |
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| T |
17561414 |
ata |
17561416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 17561414 - 17561522
Alignment:
| Q |
248 |
ataagatagtaaggttggacggaaagagtgaacgatgggttttggagtaaactgtgtagggagtatggaacgacgctgaaatctttgttatattcatcgt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17561414 |
ataagatagtaaggttggacggaaagagtgaacgatgggttttggactaaactgtgtagggagtatggaacgacgctgaaatctttgttatattcatcgt |
17561513 |
T |
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| Q |
348 |
cactgccat |
356 |
Q |
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||||||||| |
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| T |
17561514 |
cactgccat |
17561522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 29858821 - 29858721
Alignment:
| Q |
254 |
tagtaaggttggacggaaagagtgaacgatgggttttggagtaaactgtgtagggagtatggaacgacgctgaaatctttgttatattcatcgtcactgc |
353 |
Q |
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|||||||| | ||| |||||||||||||| |||| |||| ||||||| ||| ||||||||||| ||| | | ||||| | ||||| ||||| ||||||| |
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| T |
29858821 |
tagtaaggattgacagaaagagtgaacgacaggttgtggattaaactgcgtatggagtatggaatgacaccggaatctatcttatagtcatcttcactgc |
29858722 |
T |
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| Q |
354 |
c |
354 |
Q |
| |
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| |
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| T |
29858721 |
c |
29858721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 29879081 - 29879021
Alignment:
| Q |
186 |
caccttccaaacatatcaatccattgcaagaaccaattatacaggagcattctttgtcttt |
246 |
Q |
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||||| ||||||| ||||| |||||||| ||||||| ||||| |||| ||||||||||||| |
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| T |
29879081 |
cacctcccaaacagatcaagccattgcacgaaccaagtatacgggagtattctttgtcttt |
29879021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 29106319 - 29106277
Alignment:
| Q |
128 |
gtggctgggttcaataaacggagccagtactcttgataatcgt |
170 |
Q |
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| T |
29106319 |
gtggctgggttccataaacggagccagtactctatataatcgt |
29106277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 29074584 - 29074552
Alignment:
| Q |
128 |
gtggctgggttcaataaacggagccagtactct |
160 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
29074584 |
gtggctgggttccataaacggagccagtactct |
29074552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 3561517 - 3561554
Alignment:
| Q |
128 |
gtggctgggttcaataaacggagccagtactcttgata |
165 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |
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| T |
3561517 |
gtggctgggttccataaacggagccagtaatcttgata |
3561554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 11849219 - 11849251
Alignment:
| Q |
128 |
gtggctgggttcaataaacggagccagtactct |
160 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
11849219 |
gtggctgggttccataaacggagccagtactct |
11849251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 3625221 - 3625165
Alignment:
| Q |
192 |
ccaaacatatcaatccattgcaagaaccaattatacaggagcattctttgtctttca |
248 |
Q |
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|||||||||||||||||||||| ||||||| ||||| ||| || ||||||| |||| |
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| T |
3625221 |
ccaaacatatcaatccattgcaggaaccaactatacgagagtatcctttgtcgttca |
3625165 |
T |
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