View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_low_36 (Length: 365)

Name: NF1739_low_36
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_low_36
NF1739_low_36
[»] chr8 (8 HSPs)
chr8 (1-350)||(23173089-23173438)
chr8 (3-65)||(18564772-18564834)
chr8 (9-65)||(25393894-25393950)
chr8 (9-65)||(25727952-25728008)
chr8 (26-65)||(18564449-18564488)
chr8 (77-144)||(20311206-20311274)
chr8 (77-144)||(21104843-21104911)
chr8 (14-62)||(21298513-21298561)
[»] chr3 (15 HSPs)
chr3 (188-350)||(52614431-52614593)
chr3 (3-63)||(12759016-12759076)
chr3 (3-63)||(14280459-14280519)
chr3 (15-54)||(10928583-10928622)
chr3 (21-65)||(13292160-13292204)
chr3 (10-65)||(26817477-26817533)
chr3 (77-150)||(7160667-7160741)
chr3 (247-289)||(28304376-28304417)
chr3 (77-117)||(4500991-4501032)
chr3 (12-52)||(10917848-10917888)
chr3 (21-65)||(13363003-13363047)
chr3 (14-62)||(13953770-13953818)
chr3 (15-55)||(20724630-20724670)
chr3 (4-36)||(24111020-24111052)
chr3 (9-56)||(26820689-26820737)
[»] scaffold0103 (1 HSPs)
scaffold0103 (3-65)||(16171-16233)
[»] chr2 (6 HSPs)
chr2 (3-65)||(16934043-16934105)
chr2 (3-65)||(42255884-42255946)
chr2 (3-63)||(13073283-13073343)
chr2 (3-60)||(22268280-22268337)
chr2 (77-145)||(35666571-35666640)
chr2 (13-65)||(23959016-23959068)
[»] chr1 (4 HSPs)
chr1 (3-65)||(23190814-23190876)
chr1 (88-145)||(31587487-31587544)
chr1 (15-54)||(35895704-35895743)
chr1 (15-55)||(17025461-17025501)
[»] chr4 (1 HSPs)
chr4 (3-65)||(4746690-4746752)
[»] chr5 (4 HSPs)
chr5 (3-63)||(12860269-12860329)
chr5 (14-62)||(12078366-12078414)
chr5 (3-65)||(25936663-25936725)
chr5 (10-54)||(37334852-37334896)
[»] chr7 (7 HSPs)
chr7 (3-62)||(9553246-9553305)
chr7 (15-62)||(15304144-15304191)
chr7 (3-65)||(1782594-1782656)
chr7 (16-62)||(9762218-9762264)
chr7 (15-55)||(9802687-9802727)
chr7 (26-54)||(19141887-19141915)
chr7 (26-54)||(20741286-20741314)
[»] chr6 (4 HSPs)
chr6 (3-63)||(17291157-17291217)
chr6 (3-62)||(11130445-11130504)
chr6 (15-62)||(12183463-12183510)
chr6 (15-55)||(14070667-14070707)
[»] scaffold0022 (1 HSPs)
scaffold0022 (15-62)||(158646-158693)
[»] scaffold0514 (1 HSPs)
scaffold0514 (12-62)||(6786-6836)
[»] scaffold0040 (1 HSPs)
scaffold0040 (12-54)||(8289-8331)
[»] scaffold0220 (1 HSPs)
scaffold0220 (15-55)||(2340-2380)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 23173438 - 23173089
Alignment:
Q  1 taattgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcctacaatttgtaatatagtgaaaatctttgaaagtgc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  23173438 taattgagcatttggaagtttcttgcttgtgtgcttgagcattggaagtctcttggttgtgtcctgcaatttataatatagtggaaatctttgaaagtgc 23173339  T
Q  101 aaggagactagactactcccgaattgtaggaggaactcgtataatagcttatttattctccgctccatcaataacctcccacgtgggaggaattaatcaa 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23173338 aaggggactagactactcccgaattgtaggaggaactcgtataatagcttatttattctccgctccatcaataacctcccacgtgggaggaattaatcaa 23173239  T
Q  201 tgataattgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23173238 tgataattgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaatagaatattatgtaa 23173139  T
Q  301 attgtccgagtgcgattagactagttgtttacttgtgcaaaggaatctgc 350  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  23173138 attgtccgagtgcgattaggctagttgtttacctgtgcaaagaaatctgc 23173089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 18564834 - 18564772
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||| |||||||||| ||||| ||||||| |||  |||||||||| ||||||||||    
T  18564834 attgagcattttgaagtttcttacttgtctgcttgatcataagaagtctcttagttgtgtcct 18564772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25393894 - 25393950
Alignment:
Q  9 catttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||| |||| |||||||| || || |||| ||||||||||||||||||||    
T  25393894 catttggaagtctcttgcttgtgtgtttaagtattgaaagtctcttggttgtgtcct 25393950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25727952 - 25728008
Alignment:
Q  9 catttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||| |||| |||||||| || || |||| ||||||||||||||||||||    
T  25727952 catttggaagtctcttgcttgtgtgtttaagtattgaaagtctcttggttgtgtcct 25728008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 18564449 - 18564488
Alignment:
Q  26 cttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  18564449 cttgtgtgcttgagcattggaagttttttggttgtgtcct 18564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 20311274 - 20311206
Alignment:
Q  77 tatagtgaaaat-ctttgaaagtgcaaggagactagactactcccgaattgtaggaggaactcgtataa 144  Q
    |||||||||||| | |||||||||||||| ||||| ||||||| ||| ||||| | |||||| ||||||    
T  20311274 tatagtgaaaattcattgaaagtgcaaggggactatactactctcgatttgtaaggggaactagtataa 20311206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 21104911 - 21104843
Alignment:
Q  77 tatagtgaaaat-ctttgaaagtgcaaggagactagactactcccgaattgtaggaggaactcgtataa 144  Q
    |||||||||||| | |||||||||||||| ||||| ||||||| ||| ||||| | |||||| ||||||    
T  21104911 tatagtgaaaattcattgaaagtgcaaggggactatactactctcgatttgtaaggggaactagtataa 21104843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 21298561 - 21298513
Alignment:
Q  14 ggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||||| |||| ||||||||||||||||  |||||||||||| ||||||    
T  21298561 ggaagtctcttgcttgtgtgcttgagcaaaggaagtctcttgcttgtgt 21298513  T

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Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 188 - 350
Target Start/End: Original strand, 52614431 - 52614593
Alignment:
Q  188 aggaattaatcaatgataattgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaata 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52614431 aggaattaatcaatgataattgataagctattttaataaaaataacaaagtcgttaactattctcacaaggacagtaagtgaggagtaatattttcaata 52614530  T
Q  288 gaatattatgtaaattgtccgagtgcgattagactagttgtttacttgtgcaaaggaatctgc 350  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  52614531 gaatattatgtaaattgtccgagtgcgattaggctagttgtttacctgtgcaaaggaatctgc 52614593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 12759076 - 12759016
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtc 63  Q
    |||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||    
T  12759076 attgagcatttgaaagtctcatgcttgtgtgcttaagcattggaagtctcttggttgtgtc 12759016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 14280519 - 14280459
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtc 63  Q
    ||||| ||||||||||| |||| ||||||||||||||||||  |||||| |||||||||||    
T  14280519 attgaacatttggaagtctcttgcttgtgtgcttgagcattataagtcttttggttgtgtc 14280459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 10928622 - 10928583
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctctt 54  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  10928622 gaagtttcttgcttgtgtgcttgagcattggaagtctctt 10928583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 13292160 - 13292204
Alignment:
Q  21 tcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  13292160 tcttgcttttgtgcttgagcattggaagtctcttggctgtgtcct 13292204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 26817533 - 26817477
Alignment:
Q  10 atttggaagtttcttccttgtgtgcttgagca-ttggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||  |||||||    
T  26817533 atttggaagtttcttacttgtgtacttgagcatttggaagtctcttggaagtgtcct 26817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 7160667 - 7160741
Alignment:
Q  77 tatagtgaaaatc-tttgaaagtgcaaggagactagactactcccgaattgtaggaggaactcgtataatagctt 150  Q
    ||||||||||||| |||||| |||||||  |||| || ||||||  |||||||||||||||| ||||||| ||||    
T  7160667 tatagtgaaaatcctttgaatgtgcaagaggactggagtactcctaaattgtaggaggaactagtataattgctt 7160741  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 28304376 - 28304417
Alignment:
Q  247 attctcacaaggacagtaagtgaggagtaatattttcaataga 289  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  28304376 attctcacaaggacagtaagtg-ggagtaatatttttaataga 28304417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 4501032 - 4500991
Alignment:
Q  77 tatagtgaaaatct-ttgaaagtgcaaggagactagactact 117  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  4501032 tatagtgaaaatctcttgaaagtgcaaggggactagactact 4500991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 10917888 - 10917848
Alignment:
Q  12 ttggaagtttcttccttgtgtgcttgagcattggaagtctc 52  Q
    ||||||||||||| |||||||||||||||| | ||||||||    
T  10917888 ttggaagtttcttgcttgtgtgcttgagcaatagaagtctc 10917848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 13363047 - 13363003
Alignment:
Q  21 tcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    |||| ||| ||||||||||||||||||||||||||| | ||||||    
T  13363047 tctttcttttgtgcttgagcattggaagtctcttggctttgtcct 13363003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 13953818 - 13953770
Alignment:
Q  14 ggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||||| |||| ||||||||||||||||  |||||||||||| ||||||    
T  13953818 ggaagtctcttgcttgtgtgcttgagcaaaggaagtctcttgcttgtgt 13953770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 20724670 - 20724630
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttg 55  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  20724670 gaagtatcttgcttgtgtgcttgagcataggaagtctcttg 20724630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 24111052 - 24111020
Alignment:
Q  4 ttgagcatttggaagtttcttccttgtgtgctt 36  Q
    |||||||||||||||| ||||||||||||||||    
T  24111052 ttgagcatttggaagtctcttccttgtgtgctt 24111020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 26820737 - 26820689
Alignment:
Q  9 catttggaagtttcttccttgtgtgcttgagca-ttggaagtctcttgg 56  Q
    |||||||||||||||| ||||||| | |||||| |||||||||||||||    
T  26820737 catttggaagtttcttgcttgtgtacgtgagcatttggaagtctcttgg 26820689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16233 - 16171
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||    
T  16233 attgagcatttggaagtctcttttttgtgtgcttgagcataggaagtctcttggttgtgtcct 16171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 16934043 - 16934105
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||    
T  16934043 attgagcatttggaagtctcttttttgtgtgcttgagcataggaagtctcttggttgtgtcct 16934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 42255946 - 42255884
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||||| |||| |||||||| ||||||||  |||||||||||||||||||||    
T  42255946 attgagcatttggaagtctctttcttgtgtggttgagcatatgaagtctcttggttgtgtcct 42255884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 13073343 - 13073283
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtc 63  Q
    ||||||||||| |||||  ||| |||||||||||| |||||| | ||||||||||||||||    
T  13073343 attgagcattttgaagtcccttgcttgtgtgcttgggcattgtatgtctcttggttgtgtc 13073283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 22268337 - 22268280
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgt 60  Q
    ||||||||||||||| | |||| ||||||||||| |||||| ||||||| ||| ||||    
T  22268337 attgagcatttggaaatctcttgcttgtgtgcttaagcattagaagtcttttgcttgt 22268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 35666571 - 35666640
Alignment:
Q  77 tatagtgaaaatct-ttgaaagtgcaaggagactagactactcccgaattgtaggaggaactcgtataat 145  Q
    |||||||||||||  ||||||||||||||||||| ||||||| | | || |||||| ||||| |||||||    
T  35666571 tatagtgaaaatcccttgaaagtgcaaggagactggactacttctgcatcgtaggaagaactagtataat 35666640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 23959068 - 23959016
Alignment:
Q  13 tggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||  |||| | |||||||||| ||||||||||| |||||||||    
T  23959068 tggaagtttcttgattgtatacttgagcatttgaagtctcttgtttgtgtcct 23959016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 23190876 - 23190814
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||    
T  23190876 attgagcatttggaagtctcttgcttgggcgcttgagcattggaagtctcttggttgtgtcct 23190814  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 31587487 - 31587544
Alignment:
Q  88 tctttgaaagtgcaaggagactagactactcccgaattgtaggaggaactcgtataat 145  Q
    |||||||||||||||||||| | ||||||||  || |||||||||||||| |||||||    
T  31587487 tctttgaaagtgcaaggagattggactactcttgatttgtaggaggaactagtataat 31587544  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 35895743 - 35895704
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctctt 54  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  35895743 gaagtctcttgcttgtgtgcttgagcattggaagtctctt 35895704  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 17025461 - 17025501
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttg 55  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  17025461 gaagtctcttgcttgtgtgcttgagcataggaagtctcttg 17025501  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 4746690 - 4746752
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||| | |||| |||||||||||||||||  ||| |||||||||||||||||    
T  4746690 attgagcatttggaaatctctttcttgtgtgcttgagcatatgaaatctcttggttgtgtcct 4746752  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12860269 - 12860329
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtc 63  Q
    ||||||||||||  ||  |||| ||||||||||||| ||||||||||||||||||||||||    
T  12860269 attgagcatttgagagcatcttgcttgtgtgcttgaacattggaagtctcttggttgtgtc 12860329  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 12078414 - 12078366
Alignment:
Q  14 ggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||||| |||| ||||||||||||||||| |||||||||||| ||||||    
T  12078414 ggaagtctcttgcttgtgtgcttgagcataggaagtctcttgcttgtgt 12078366  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 25936663 - 25936725
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    ||||||||||||||| |  ||| ||||| ||||||||||   |||||||||||||||||||||    
T  25936663 attgagcatttggaattcccttgcttgtatgcttgagcacatgaagtctcttggttgtgtcct 25936725  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 37334896 - 37334852
Alignment:
Q  10 atttggaagtttcttccttgtgtgcttgagcattggaagtctctt 54  Q
    |||| ||||||||||  || |||||||||||||||||||||||||    
T  37334896 atttagaagtttcttgtttctgtgcttgagcattggaagtctctt 37334852  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 9553305 - 9553246
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    ||||||||||| ||||| |||| ||||| ||||| ||||| |||||||||||||||||||    
T  9553305 attgagcatttagaagtctcttgcttgtctgctttagcataggaagtctcttggttgtgt 9553246  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 15304191 - 15304144
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||||||||| |||||||||||||||||  ||||||||||| ||||||    
T  15304191 gaagtttcttgcttgtgtgcttgagcatatgaagtctcttgcttgtgt 15304144  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 1782656 - 1782594
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtcct 65  Q
    |||||||||||| |||| ||||  |||||| ||| ||||||| |||||| |||||||||||||    
T  1782656 attgagcatttgaaagtctcttgattgtgtacttcagcattgcaagtctattggttgtgtcct 1782594  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 9762264 - 9762218
Alignment:
Q  16 aagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    ||||||||| |||||||||||||||||  ||||||||||| ||||||    
T  9762264 aagtttcttgcttgtgtgcttgagcatgtgaagtctcttgcttgtgt 9762218  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 9802727 - 9802687
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttg 55  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  9802727 gaagtctcttgcttgtgtgcttgagcataggaagtctcttg 9802687  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 19141915 - 19141887
Alignment:
Q  26 cttgtgtgcttgagcattggaagtctctt 54  Q
    |||||||||||||||||||||||||||||    
T  19141915 cttgtgtgcttgagcattggaagtctctt 19141887  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 20741314 - 20741286
Alignment:
Q  26 cttgtgtgcttgagcattggaagtctctt 54  Q
    |||||||||||||||||||||||||||||    
T  20741314 cttgtgtgcttgagcattggaagtctctt 20741286  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 17291217 - 17291157
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgtc 63  Q
    ||||| ||||||||||| |||  ||||||||||||| ||||||||| || |||||||||||    
T  17291217 attgatcatttggaagtctctagcttgtgtgcttgatcattggaagacttttggttgtgtc 17291157  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 11130504 - 11130445
Alignment:
Q  3 attgagcatttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    ||||||||||||||||| |||| |||||||| ||||| ||| ||||||| ||| ||||||    
T  11130504 attgagcatttggaagtctcttacttgtgtgtttgagtatttgaagtcttttgtttgtgt 11130445  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 12183463 - 12183510
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||||||||| ||||| ||||||||||||| |||||||||| ||||||    
T  12183463 gaagtttcttgcttgtatgcttgagcattgaaagtctcttgcttgtgt 12183510  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 14070667 - 14070707
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttg 55  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  14070667 gaagtctcttgcttgtgtgcttgagcataggaagtctcttg 14070707  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 158693 - 158646
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    ||||| |||| ||||||||||||||||| |||||||||||| ||||||    
T  158693 gaagtctctttcttgtgtgcttgagcataggaagtctcttgattgtgt 158646  T

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Target: scaffold0514 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 6836 - 6786
Alignment:
Q  12 ttggaagtttcttccttgtgtgcttgagcattggaagtctcttggttgtgt 62  Q
    |||| ||| |||| ||||||| |||||||||||||||||||||| ||||||    
T  6836 ttggcagtatcttgcttgtgtccttgagcattggaagtctcttgtttgtgt 6786  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 8289 - 8331
Alignment:
Q  12 ttggaagtttcttccttgtgtgcttgagcattggaagtctctt 54  Q
    |||||||  |||| |||||||||||||||||||||||||||||    
T  8289 ttggaagcctcttgcttgtgtgcttgagcattggaagtctctt 8331  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 2340 - 2380
Alignment:
Q  15 gaagtttcttccttgtgtgcttgagcattggaagtctcttg 55  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  2340 gaagtctcttgcttgtgtgcttgagcataggaagtctcttg 2380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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