View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_39 (Length: 342)
Name: NF1739_low_39
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 40087704 - 40087364
Alignment:
| Q |
1 |
tcttttaaagattcagttacgaattttgaaattgtagatgcagaattaatctggcatnnnnnnntt-atttttattacatcctacttactttggactaac |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
40087704 |
tcttttaaagattcagttacgaagtttgaaattgtagatgcagaattaatctggcataaaaaaatttacttttattacatcctacttactttggactaac |
40087605 |
T |
|
| Q |
100 |
aaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttgatt |
199 |
Q |
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| T |
40087604 |
aaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaatcacacttttttagtaactctattcaattaaactatctattttgatt |
40087505 |
T |
|
| Q |
200 |
gagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaaca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
40087504 |
gagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggcaagatgctcaca |
40087405 |
T |
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| Q |
300 |
gaccatgcaggcaggtgatatgaattgccactgaaatttac |
340 |
Q |
| |
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| T |
40087404 |
gaccatgcaggcaagtgatatgaattgccactgaaatttac |
40087364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 40061857 - 40061513
Alignment:
| Q |
1 |
tcttttaaagattcagttacgaattttgaaattgtagatgcagaattaatctggcatnnnnnnn---ttatttttattacatcctacttactttggacta |
97 |
Q |
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|||||| |||||| ||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
40061857 |
tcttttgaagatttagttacgaagtttgaaattgcagatgcagaattaatctgccataataaacatgttatttttattacattctacttactttggacta |
40061758 |
T |
|
| Q |
98 |
acaaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttga |
197 |
Q |
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| T |
40061757 |
ataaataagagaaaacaccttggtatagatagaatattcacaaaatgaatatggattacacttttttagtaactctattcaattaaactatctattttga |
40061658 |
T |
|
| Q |
198 |
ttgagataattgtgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaa |
297 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061657 |
ttgaaataattgcgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaa |
40061558 |
T |
|
| Q |
298 |
cagaccatgcaggcaggtgatatgaattgccactgaaatttacag |
342 |
Q |
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| T |
40061557 |
cagaccatgcaggcaagtgatatgaattgccactgaaatttacag |
40061513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 40079993 - 40079661
Alignment:
| Q |
12 |
ttcagttacgaattttgaaattgtagatgcagaattaatctggcatnnnnnnnt--tatttttattacatcctacttactttggactaacaaataagaga |
109 |
Q |
| |
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|||||||||||| |||||||| | |||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40079993 |
ttcagttacgaagtttgaaatcgcagatgcagaattaatctgccataaaaaaatgatatttttattacatcctacttaccttggactaacaaataagaga |
40079894 |
T |
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| Q |
110 |
aaacaccttgg-tatagatagaatattcacaaaatgaatatgaattacacttttttagtaactctattcaattaaactatctattttgattgagataatt |
208 |
Q |
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||||| ||||| ||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40079893 |
aaacagcttggctatagatagaataatcacaaaatgaatattaatcacactttttttgtaactctattcaattaaactatctattttgattgcgataatt |
40079794 |
T |
|
| Q |
209 |
gt-gttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgc |
307 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40079793 |
gttgttattgaagcaacttaacacaaatgaaggtaagacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctcacagaccatgc |
40079694 |
T |
|
| Q |
308 |
aggcaggtgatatgaattgccactgaaatttac |
340 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
40079693 |
aggcaagtgatatgaattgccactgaaatttac |
40079661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 22013913 - 22013994
Alignment:
| Q |
244 |
gacaaacctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgcaggcaggtgatatgaatt |
325 |
Q |
| |
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||||||||||||||||||| || || ||||| ||||| || ||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
22013913 |
gacaaacctttgcagtattgagtacaacatttttgcagtccggtaagatgctcacagaccatccaggcaagtgatatgaatt |
22013994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 44349193 - 44349263
Alignment:
| Q |
249 |
acctttgcagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgcaggcaggtgata |
319 |
Q |
| |
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||||||||||| || | ||| ||||||||||||||||| | |||||||| |||||||| ||||||||||| |
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| T |
44349193 |
acctttgcagtgttgaacacaacattcttgcaatctggaagaatgctaactgaccatgctggcaggtgata |
44349263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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