View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_4 (Length: 704)
Name: NF1739_low_4
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 167 - 688
Target Start/End: Complemental strand, 4859774 - 4859255
Alignment:
| Q |
167 |
tattaccttgataagccaaaagagtaagaatctaaggtgaccgtgacaggacatacaaaagcttggatattgacatttcattaccggggtctaatgactc |
266 |
Q |
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| T |
4859774 |
tattaccttgataagccaaaagagtaagaatctaaggtgaccgtgacaggacatacaaa-gcttggatattgacatttcattaccggggtctcatgactc |
4859676 |
T |
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| Q |
267 |
agagagactagaaaatatatagtggtagtgtaattggaaggaattgaattttgagttgaagatccagtagttttgcaacaaaggaaggggacataatgag |
366 |
Q |
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| T |
4859675 |
agagagactagaaaatatatagtgttagtgtaattggaaggaattgaattttgagttggagatccagtagttttgcaacaaaggaaggggacataatgag |
4859576 |
T |
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| Q |
367 |
gagagagagtatgagaataaaagaggaaaccaatttgcatgacatgagaggcatttgaattctaatatccaaacatgcatgcaggctagggcagtggcag |
466 |
Q |
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| T |
4859575 |
gagagagagtatgagaataaaagaggaaaccaatttgcatgacatgagaggcatttcaattctaatatccaaacatgcatgcaggctagggcagtggcag |
4859476 |
T |
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| Q |
467 |
cagcacctctttaccttacaagttacagcaattgatatttctcagtcaggttgctatcaaccaaccagtgatatcaaaatcaacctttgttttttgttgg |
566 |
Q |
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| T |
4859475 |
cagcacctctttaccttacaagttacagcaattgatatttctcagtcaggttgctatcaaccaaccagtgatatcaaaatcaacctttgttttttgttgg |
4859376 |
T |
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| Q |
567 |
gacaaatactagggtgaagtagtattagatgtggtttgcatttaaaaactttaactaccattggcatcacgaacacaagtattggaaattttgtctttga |
666 |
Q |
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| T |
4859375 |
gacaaatactagggtgaagtagtgttagatgtggtttgcatttaaaaactttaactaccattggcatcacgaacacaagtattagaaattttgtc-ttga |
4859277 |
T |
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| Q |
667 |
aaagcacttgttagtatttgtt |
688 |
Q |
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| T |
4859276 |
aaagcacttgttagcatttgtt |
4859255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4859939 - 4859824
Alignment:
| Q |
1 |
tttaaatataattttttaatctatcttctatggggacatttgtgataaggtactaaaaccagaaggcacagataaaagattaataaagagcagaaataac |
100 |
Q |
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| T |
4859939 |
tttaaatataattttttaacttatcttctatggg-acatttgtgataaggtactaaaaccagaaggtacaaataaaagattaataaagagcagaaataac |
4859841 |
T |
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| Q |
101 |
gtaccaagttgtttcac |
117 |
Q |
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| T |
4859840 |
gtaccaagttgtctcac |
4859824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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