View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_low_40 (Length: 339)
Name: NF1739_low_40
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 12502611 - 12502935
Alignment:
| Q |
1 |
acaacaaccaagccttttcccact----gaggtcaccaatttttcnnnnnnnntggtaaagaaannnnnnngatggcacttaagatacaaaagtcatttg |
96 |
Q |
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| T |
12502611 |
acaacaaccaagccttttcccactaagtgaggtcaccaatttttcaaaaaaaatggtaaagaaatttttttgatggcacttaagatacaaaagtcatttg |
12502710 |
T |
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| Q |
97 |
catgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttcctatccagagctacttccatgacttcatcgtc |
196 |
Q |
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| T |
12502711 |
catgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttcctatccagagctacttccatgacttcatcgtc |
12502810 |
T |
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| Q |
197 |
gccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagcttaaaaacaaatggtacatagagatacatagaatcatttcatatttt |
296 |
Q |
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| T |
12502811 |
gccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagcttaaaaacaaatggtacatagagatacatagaatcatttcatatttt |
12502910 |
T |
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| Q |
297 |
cttaaaaaagatgattttatcaact |
321 |
Q |
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| T |
12502911 |
cttaaaaaagatgattttatcaact |
12502935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 12479585 - 12479792
Alignment:
| Q |
68 |
gatggcacttaagatacaaaagtcatttgcatgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttccta |
167 |
Q |
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| T |
12479585 |
gatggcactcaagatacaaaagtcatttgcatgatgatataccagttgcagaaggaagcgagtatctatggaattataaatttgttgatccaatttccta |
12479684 |
T |
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| Q |
168 |
tccagagctacttccatgacttcatcgtcgccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagcttaaaaacaaatggtaca |
267 |
Q |
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| T |
12479685 |
tccaaagccacttccatgacttcatcattgccagtaatatcatcctcagcaatcatagaatctgaaattaacactgaccagcttaaaaacaaatggtaca |
12479784 |
T |
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| Q |
268 |
tagagata |
275 |
Q |
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| T |
12479785 |
gagagata |
12479792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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